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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgacttgttcaacaaaatgagaagaaggataacagtgttaaattttctgctttctgattattgtgtacatatcttacttgtatgatattcatatgcattacttgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCAATTATTGGCCCAAACGGGTGTGGAAAGAGTACTTTGCTTAAACTGATTA

Basic information

species Vitis vinifera
transcript Vv07s0031g01640.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01640.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G39670.1 (Glycine max), 3'ss of exon 3
gtgagtgacttgttcaacaaaatgagaagaaggataacagtgttaaattttctgctttctgattattgtgtacatatcttacttgtatgatattcatatgcattact-tgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCAATTATTGGCCCAAACGGGTGTGGAAAGAGTACTTTGCTTAAACTGATTA
|||||| |   |    |    || |    ||   | |   | | ||||    | || ||||  | |  |    ||||  ||      ||||      |||  ||||| ||||||  ||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||| || ||| ||||||
gtgagtta---gcatgatcttattattgaaaacctgatcat-taaaataccttactgtctgtatgtcatcgttatatgatatcaac-tgat-----catgttttactgtgccagACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTA

upper sequence: Vv07s0031g01640.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G15200.1 (Glycine max), 3'ss of exon 3
gtgagtgacttgttcaacaaaatgaga-agaaggataacagtgttaaattttctgctttctgat----tattgtgtacatatcttacttgtatgatat---tcat-atgcattact-tgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCAATTATTGGCCCAAACGGGTGTGGAAAGAGTACTTTGCTTAAACTGATTA
                      ||||  || | |||   | | || ||   |  || ||   ||    || ||| |  || || |  || |||| |||   | || |||  || || ||||||  ||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||| || ||| ||||||
---------------------gtgagctagcatgatcttattattgaaacctgagcattaaaatatcttactgtctgtatgtcattgttatatggtataactgatcatgtttttctgtgccagACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTA

upper sequence: Vv07s0031g01640.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G09930.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagtgacttgttcaacaaaatgagaagaaggataacagtgttaaattttctgctttctgattattgtgtacatatcttacttgtatgatattcatatgcattacttgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCAATTATTGGCCCAAACGGGTGTGGAAAGAGTACTTTGCTTAAACTGATTA
                            |   ||| | |  ||||  |    |||| | || |  |    |  ||  |||   | | |||| |  || |    | |  || || |  ||||||| ||||| || ||  | || ||||| ||||| ||| | || || ||||| ||||||||||| ||||||||||| ||||| ||||| ||||
----------------------------gtgagatgatatagttag-tcaaatgctgt-tggtagtacattttattgcttgtgttt-tgatctgtatttctgatgcaagc-agATGTTATTTAACAAGGCGAATCTAGCTATAGAAAGAGGAGAGAAAGTCGCTATAATTGGTCCAAACGGGTGCGGAAAGAGTACATTGCTGAAACTTATTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32456240|gb|CD797414.1|CD797414
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456175|gb|CD797349.1|CD797349
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456206|gb|CD797380.1|CD797380
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAAACCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456186|gb|CD797360.1|CD797360
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456230|gb|CD797404.1|CD797404
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456265|gb|CD797439.1|CD797439
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAAACCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456221|gb|CD797395.1|CD797395
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|30323437|gb|CD006699.1|CD006699
EST:     GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
EST: gi|32456275|gb|CD797449.1|CD797449
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456261|gb|CD797435.1|CD797435
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456216|gb|CD797390.1|CD797390
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|30323856|gb|CD007118.1|CD007118
EST:     GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAA-TTGCA
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
EST: gi|32456200|gb|CD797374.1|CD797374
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAAACCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|37189985|gb|CF609334.1|CF609334
EST:     GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAG                         GAACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
EST: gi|30301899|gb|CB978693.1|CB978693
EST:     TGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
genomic: TGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
EST: gi|32269520|gb|CD718679.1|CD718679
EST:     GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
EST: gi|32268733|gb|CD717892.1|CD717892
EST:     GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
EST: gi|32456177|gb|CD797351.1|CD797351
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456229|gb|CD797403.1|CD797403
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAAACCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456176|gb|CD797350.1|CD797350
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|29785439|gb|CB342426.2|CB342426
EST:     GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
EST: gi|32456234|gb|CD797408.1|CD797408
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456282|gb|CD797456.1|CD797456
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAAACCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|30126973|gb|CB912312.1|CB912312
EST:     GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
EST: gi|32456268|gb|CD797442.1|CD797442
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456239|gb|CD797413.1|CD797413
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456250|gb|CD797424.1|CD797424
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456207|gb|CD797381.1|CD797381
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|30322545|gb|CD005807.1|CD005807
EST:     GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
EST: gi|32456266|gb|CD797440.1|CD797440
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456267|gb|CD797441.1|CD797441
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32456190|gb|CD797364.1|CD797364
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT
EST: gi|32269321|gb|CD718480.1|CD718480
EST:     GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCA
EST: gi|32456222|gb|CD797396.1|CD797396
EST:     GAAGATCTGTTTTAGCAATTAAGAATTTGGAATTTGGCTATGGGGATAAG                         GTACTATTTAAAAAGGCAACCCTT
genomic: GAAGATCTGTTTTAGCAATTAAGAATCTGGAATTTGGCTATGGGGATAAGgtgagtgact ... tacttgccagGTACTATTTAAAAAGGCAAACCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgattattgtgtacatatcttacttgtatgatattcatatgcattacttgccagGTACTATTTAAAAAGGCAAACCTTACAATTGAAAGGGGAGAAAAAATTGCAATTATTGGCCCAAACGGGTGTGGAAAGAGTACTTTGCTTAAACTGATTA
                 atcttac  putative branch site (score: 3)
                           tatgatattcatat  TA-rich tract