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gtatggaatgatgcccagtttgatcttttatattgagcttcaccctttcttgttcactagtattttggcattgtatgtgataaatggttttatgaagaatggccttaaaaaatgaaatattgggcttagtgttattgggttctctaagatggttttgtgcattcatctgatttgaagttaataaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTTGTTG
species | Vitis vinifera |
transcript | Vv07s0031g01600.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTGEST: gi|18458639|gb|BM436917.1|BM436917
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTTEST: gi|55778155|gb|AJ862939.1|AJ862939
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGATGAGGCTTTGATTTTGAAG AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTTEST: gi|71854625|gb|DT003680.1|DT003680
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGATGAGGCTTTGATTTTGAAG AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTTEST: gi|30131700|gb|CB917039.1|CB917039
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: GGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTTEST: gi|110709925|gb|EE085812.1|EE085812
genomic: GGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTATATATCTTEST: gi|110713219|gb|EE088948.1|EE088948
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTATATATCTTEST: gi|349832444|gb|FQ421005.1|FQ421005
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG AATAAGTCACAAGAGATTCTGCCTTATATAGATGGACGCTGTGTATATCTTEST: gi|161718354|gb|FC065013.1|FC065013
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTTEST: gi|110708701|gb|EE086542.1|EE086542
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTATATATCTTEST: gi|294966086|gb|GW837453.1|GW837453
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTCGAAG AATAAGTCACAATAGATTCTGCCGTATATAGATGGACGCTGTATATATCTTEST: gi|71874768|gb|DT023823.1|DT023823
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
EST: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAG AATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
genomic: TGGAATCTGGAAGTTTTCCTCCTTCTTTAGACGAGGCTTTGATTTTGAAGgtatggaatg ... aaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTT
ggttctctaagatggttttgtgcattcatctgatttgaagttaataaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTTGTTG
agttaat putative branch site (score: 4)
tgatttgaagttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggaatgatgcccagtttgatcttttatattgagcttcaccctttcttgttcactagtattttggcattgtatgtgataaatggttttatgaagaatggccttaaaaaatgaaatattgggcttagtgttattgggttctctaagatggttttgtgcattcatctgatttgaagttaataaaattgcagAATAAGTCACAAGAGATTCTGCCGTATATAGATGGACGCTGTGTATATCTTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
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