Sequence
atgc intronic sequence ATGC exonic sequence...atcattacaattttgcatttgatgtgaatttcattctctgcaaagaagagaatttgctttgaactactgttcatgaatttgatatctttcagtgatgcagGCAGCTTTTCTTTTTACGGTAGTGGGGACAACAGGATTTTTAGGTGTTCTTGCTGGCCAGCTTCCTGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os04g54640.2 (Oryza sativa), 3'ss of exon 3
------------------------------------------------------------------------------atcattacaattttgcatttga----tgtgaattt-cattctctgcaaagaag----------agaatttgctttgaactactgttcatgaatttgatatctttcagtgatgcagGCAGCTTTTCTTTTTACGGTAGTGGGGACAACAGGATTTTTAGGTGTTCTTGCTGGCCAGCTTCCTGGG
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gtaaggcttgctacacagcttaaaaatgtatctgtaactttgtttagttatttgcaaattgcaatggtgcaacgtgattttgtgggaattctggaatcaagcattgcaaaattgcatatgcagaagaatagtagtagtgccataatttgttcagaaacataatcc-tgcattttccttgttgtgatcatgcagGCAGCATTTTTGTTCACTGTTGTTGGTTCAACCGGATTCTTAGGCGTTCTTGCAGGCCAGCTTCCTGGG
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G31720.1 (Glycine max), 3'ss of exon 3
--------------------------------------------------------------------------atcattacaatt--ttgcatttgatgtgaatttcattctctgcaaagaagagaatttgc--tttgaac-tactgttcatgaatttg-----atatctttcagtgatgcagGCAGCTTTTCTTTTTACGGTAGTGGGGACAACAGGATTTTTAGGTGTTCTTGCTGGCCAGCTTCCTGGG
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gtgagtttcagaaatcttttaatttttagtatgaaatggagtatgtaatatcatatgtaaatatctcaattgtaaatggggaaactagtaatttctaataagactttcaatcttgaaaacatatgtttcttgtaagttgtacacattcttaacaaacaagtaacaaaaatctttgatggtgcagGCAGCTTTTCTTTTTACCGTGGTTGGAACAACAGGATTTTTGGCTGTTCTTGCTGGGCAACTTCCCGGG
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G14970.1 (Glycine max), 3'ss of exon 3
----------------------------------------------------------------------------------------atcattacaatt--ttgcatttgatgtgaatttcattctctgcaaagaagagaatttgc------tttgaactactgttcatgaatt--tgatatctttcagtgatgcagGCAGCTTTTCTTTTTACGGTAGTGGGGACAACAGGATTTTTAGGTGTTCTTGCTGGCCAGCTTCCTGGG
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gtgagtttcagaaatcttttaattcttagtatcaaatggaatgagcagtgcttttaaatatgtaatatgtaaatatctcgattgtatacatgtggcaactagtaatttctattaagactttcaatcttgaaaacacatgtttcttgtaagttgtatgcattcttaaccaacaagtaacaaaaatctttgatggtgcagGCAGCTTTTCTTTTTACTGTGGTTGGAACAACAGGATTTCTGGGTGTTCTGGCTGGGCAACTTCCCGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32270105|gb|CD719264.1|CD719264EST: GGAAAACCTTGCAATTCCAAGTGTTAGAAATGAT GCAGCTTTTCTTTTTACGGTAGTGGGGACAACAGGATTTTTAGGTGTTCTT
genomic: GGAAAACCTTGCAATTCCAAGTGTTAGAAATGATgtaagtatta ... agtgatgcagGCAGCTTTTCTTTTTACGGTAGTGGGGACAACAGGATTTTTAGGTGTTCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagagaatttgctttgaactactgttcatgaatttgatatctttcagtgatgcagGCAGCTTTTCTTTTTACGGTAGTGGGGACAACAGGATTTTTAGGTGTTCTTGCTGGCCAGCTTCCTGGG
atttgat putative branch site (score: 5)
tctttca CT-rich tract
aatttgatatcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atcattacaattttgcatttgatgtgaatttcattctctgcaaagaagagaatttgctttgaactactgttcatgaatttgatatctttcagtgatgcagGCAGCTTTTCTTTTTACGGTAGTGGGGACAACAGGATTTTTAGGTGTTCTTGCTGGCCAGCTTCCTGGG
- - - - - - - gcatttg
- - - - - - - - - - - - - - - -cattctc
- - - - - - - - - - - - - - - - - - - - - - -aagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcatg