1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatttatgaacttctctagtgtatagaagacatgcaatttgaatgtcttgcaataattgtatctcacacaagttgtttgaatgatggcagTGAAAACGAGCCTTCTAGGTGCTGATAATCTGCAGATCCGAGACTTT
species | Vitis vinifera |
transcript | Vv07s0031g01350.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCTGCTGCAGTGCCATCTTTTGGTGGCTTTGAATTTTCAAGCAAAGCAG TGAAAACGAGCCTTCTAGGTGCTGATAATCTGCAGATCCGAGACTTTEST: gi|110712897|gb|EE088346.1|EE088346
genomic: CTCTGCTGCAGTGCCATCTTTTGGTGGCTTTGAATTTTCAAGCAAAGCAGgtatttatga ... atgatggcagTGAAAACGAGCCTTCTAGGTGCTGATAATCTGCAGATCCGAGACTTT
EST: CTCTGCTGCAGTGCCATCTTTTGGTGGCTTTGAATTTTCAAGCAAAGCAG TGAAAACGAGCCTTCTAGGTGCTGANTA-TCTGCAGATCCGAGACTTTEST: gi|110418266|gb|EC984402.1|EC984402
genomic: CTCTGCTGCAGTGCCATCTTTTGGTGGCTTTGAATTTTCAAGCAAAGCAGgtatttatga ... atgatggcagTGAAAACGAGCCTTCTAGGTGCTGA-TAATCTGCAGATCCGAGACTTT
EST: CTCTGCTGCAGTGCCATCTTTTGGTGGCTTTGAATTTTCAAGCAAAGCAG TGAAAACGAGCCTTCTAGGTGCTGATAATCTGCAGATCCGAGACTTT
genomic: CTCTGCTGCAGTGCCATCTTTTGGTGGCTTTGAATTTTCAAGCAAAGCAGgtatttatga ... atgatggcagTGAAAACGAGCCTTCTAGGTGCTGATAATCTGCAGATCCGAGACTTT
aatttgaatgtcttgcaataattgtatctcacacaagttgtttgaatgatggcagTGAAAACGAGCCTTCTAGGTGCTGATAATCTGCAGATCCGAGACTTT
atctcac putative branch site (score: 3)
aataattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttatgaacttctctagtgtatagaagacatgcaatttgaatgtcttgcaataattgtatctcacacaagttgtttgaatgatggcagTGAAAACGAGCCTTCTAGGTGCTGATAATCTGCAGATCCGAGACTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT