Sequence
atgc intronic sequence ATGC exonic sequence...ttaatttgtgtttcatgtaaggttgagaagtagaaatgcaaaattttgttttccacaattgcggcaatgaaactaacttggtgcccttttgttggcttagGATTTTGGACAATGTGATGCAAAAAGGTGCACAGGACGCAAACTTTCAAGATTCGGCCTGCTGAAAGAAAGTATCCGTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01200.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G31550.1 (Glycine max), 3'ss of exon 3
ttaatttgtgtttcatgtaagg-ttgagaagtagaaatgcaaaattttgttttccacaattgcggcaatgaaactaacttggtgcccttt-tgttggcttagGATTTTGGACAATGTGATGCAAAAAGGTGCACAGGACGCAAACTTTCAAGATTCGGCCTGCTGAAAGAAAGTATCCGTTTG
|| | | | | |||| | | || ||| || | | | ||| | | ||| || | ||| | | | | | ||||| |||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||| ||| |||| |||
-tactgtatatgtcatctctgaattcagatctaatattcatatggcatgtaatgtaactttgtattt-tggatgtaattggatttttgtgattctggctcagGATTTTGGGCAATGCGATGCCAAAAGGTGCACTGGACGCAAGCTTTCAAGATTGGGCATGCTAAAA---------------
upper sequence: Vv07s0031g01200.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G14780.1 (Glycine max), 3'ss of exon 3
ttaatttgtgtttcatgtaaggttgagaagtagaaatgcaaaattttgttttccacaattgcggcaatgaaactaacttggtgcccttt-tgttggcttagGATTTTGGACAATGTGATGCAAAAAGGTGCACAGGACGCAAACTTTCAAGATTCGGCCTGCTGAAAGAAAGTATCCGTTTG
||| | | | | || ||| | | || || | | | | || | || | ||| | ||| | |||||||| |||||||||| ||||| ||||| |||| |||||| |||||||| ||||||||||| ||| |||| |||
ttactgtattgtcatctctgaattcagatcttaatattcata-tggcatgtaatgtaacttttattttggatgtaattgggtttttgtgatgttggctcagGATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGATTGGGCATGCTAAAA---------------
upper sequence: Vv07s0031g01200.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G10070.1 (Arabidopsis thaliana), 3'ss of exon 3
ttaatttgtgtttcatgtaaggttgagaagtagaaatgcaaaattttgttttccacaattgcggcaatgaaactaacttggtgcccttttgttggcttagGATTTTGGACAATGTGATGCAAAAAGGTGCACAGGACGCAAACTTTCAAGATTCGGCCTGCTGAAAGAAAGTATCCGTTTG
|| ||||| | || | || | || | ||| || | || ||||| || ||| || |||| || | |||||||||||| |||||||||||||| ||||||||||| || || ||| | ||||| | || | |||
gtatgcatagtttcctttatgttttattcaaagcca-atgaaacttcgaagaaca-aattgttgcttcagtactcac--aactgtgttttttttgtttagGATTTTGGTCAATGTGATGCAAAGAGGTGCACAGGTCGTAAGCTTGCTAGATTTAACTTGTTAAAA--------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttttccacaattgcggcaatgaaactaacttggtgcccttttgttggcttagGATTTTGGACAATGTGATGCAAAAAGGTGCACAGGACGCAAACTTTCAAGATTCGGCCTGCTGAAAGAAAGTATCCGTTTG
aactaac putative branch site (score: 1)
cccttttgtt putative PPT
aatgaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttaatttgtgtttcatgtaaggttgagaagtagaaatgcaaaattttgttttccacaattgcggcaatgaaactaacttggtgcccttttgttggcttagGATTTTGGACAATGTGATGCAAAAAGGTGCACAGGACGCAAACTTTCAAGATTCGGCCTGCTGAAAGAAAGTATCCGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - tcatgta
- - - - - - - - - - - - - - - - - aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -caattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccctt