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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttagtaactcaatttcattgaaaatatttgcatgtgtggaaagcattatttgatttatttatagtatgatataatttatattataatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA

Basic information

species Vitis vinifera
transcript Vv07s0031g00920.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 3
---gtaagttagtaactcaatttcattgaaaatatttgcatgt-gtggaaagcattatttgatttatttatagtatgatataatttatattataatgat-cagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA
    |  |  | | | | |  |   ||||| | ||   ||  | ||    ||  ||     |  | ||| |    |  | | ||   ||| | ||  || ||||||||||| |||||| |||| || ||||| |||||||| ||  ||||||||||||| ||||| ||| ||||||| ||||| || ||||||||||||||||
atctttggacaatgattga--tctgttgaatacatccacaaatagttttcagatttgcagaacctgtttttc-cgttttctgatggttatgaaaaaaattcagGTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAACCTGGCTGATGCTATGACCAGGGCAAAGGTACTTGACATTGATCTGCAGA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 3
-gtaagttagtaactcaatttcattgaaaatatttgcatgtgtggaaagcatt-atttgatttatttatagtatgatataatttatattataatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA
 |     || | ||  |   |  |   || |  ||| |  |    |||   || |  |  | | || ||       |  || |  |    |  |  ||||||||||||||| ||| |||| ||||| || |||||||||||   |||||||||||||||||| ||| ||||||| ||||| ||||||||||| |||||||
tgggcagtactgacagacggtggtgctaactggttgtaaatcctcaaacttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAACCTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTGCAGA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 1
-gtaagttagtaactcaatttcattgaaaatatttgcatgtgtggaaagcatt-atttgatttatttatagtatgatataatttatattataatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA
 |     || | ||| |   |  |   || |  ||| |  |    |||   || |  |  | | || ||       |  || |  |    |  |  |||||||||| | || ||| |||| ||||| || |||||||||||   ||||||| |||||||||| ||| ||||||| ||||| ||||||||||| || ||||
tgggcagtactgactgacggtggtgctaactggttgtaaatcctcaaacttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACACTGACGACCTTGTGTTTGGAGGCTGGGACATCAGCATCATGAACTTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTACAGA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 3
--gtaagttagtaactcaatttcattgaaaatatttgcatgtgtggaaag-cattatttgatttatttatagtatgatataatttatattataatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA
      ||     | | |   |  |   || |  |||||  |  | | |  |  | |||| | | ||  |   ||||   | | |  |   |  |  ||||||||||||||| |||||||| || || || |||||||| ||  ||||||||||||| ||  | ||| ||||||| ||||| ||||| ||||| |||||||
acactcgtgcagtattgacgatggtgctaactggttgcagattcgcagactcggtgtttgttatcttcttttcatgaccaagtgttgaac-tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACCTGGCCGACTCCATGACCAGGGCCAAGGTGCTGGATATTGACCTGCAGA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G177461_T01 (Zea mays), 3'ss of exon 3
gtaagttagtaactcaatttcattgaaa-atatttgcatgtgtggaaagcattatttgatttatttatagta-tgatataatttatattataatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA
  ||  ||  |  |  | ||  |||  | |    | ||    ||  |  |    || | | | | |  |||| ||  ||  | |   ||  |     ||||| |||||  |    || || ||||| || |||||||||||| || ||||| |||| || || |||||||||||  ||||||| |||||| | || ||||
aaaaactatcagttttaatttgttgcgacactagtacactactgtgatacccagttagttctttcttcagtagtggcattgtattgcttgaatcatgcagGTTAACCCCAACACTATCGTCTTTGGTGGGTGGGACATCAGTAACCTGAACATGGCCGACGCCATGGCCAGGGCCCAGGTCCTAGACATTCACCTTCAGA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 2
gtaagttagtaactcaatttcattg-aaaatatttgcatgtgtggaaagcattatttgatttat-ttatagtatgatataatttatattataatgat-cagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA
 ||| ||  ||||    |   |    |||||  ||  ||       |   | | | |||   ||   ||| |   | |  | |  || |  | | || ||||||||||| |||||  |||| |||||||||||||| |||||| || |||||||||| ||||| ||||||||||| |||||  | || || || |||||||
ataatttc-taacatgctgaaaacataaaattcttaaattaactatacttagtttctgaaccatgccataattaaacacgagtcttaattaatttatgcagGTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCTGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G31450.2 (Glycine max), 3'ss of exon 3
gtaagttagtaactcaatttcattgaaaatatttgcatg-tgtggaaagcattatttgatttatttatagtatgatataa-------tttatattataatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA
| |  | ||| ||         ||||||| || |   |  | |  ||   |||||      | |||  |  |||  ||||       | |  ||||   |   ||||| ||||| |||||  |||| |||||||||||||| |||||| || |||||||||||||||| ||||||||||| |||||  | || || || |||||||
ggacatgagtgacatg------ttgaaaacatataattactattaaattaattatacttactttttgaaccatgccataaacacgagtcttaattaatttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G02210.1 (Glycine max), 3'ss of exon 3
----------------------------------------gtaagttagtaactcaatt--tcattgaaaatatttgcatgtgtggaaa-gcattatttgatttatttatagtatga--tataattt----atattataatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA
                                           | |||||      | |  | ||||||  | ||  ||| ||   |   |   || || |  | ||| ||   |    |||    |    |||      |   ||||| || || || |||||||| |||||||||||||| |||||  ||||||||||||| ||||| ||||||||||| |||||  | ||||| ||| ||||||
gtatcattacaacaatttatcattttttaattgattttatcagatttagtcctcggagtgttgattgaagtttttgacatatgcccacttgttgtagttaaggtttttgtaacttagcttatggccttgaaataaatctgttggcagGTTAATCCTGACGACATTGTGTTTGGGGGATGGGATATCAGCAACATGAACCTGGCTGATGCCATGGCCAGGGCAAAGGTGTTTGACATCGATTTGCAGA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 3'ss of exon 3
-----------------------------------------------------------------------gtaagttagtaactcaatttcattgaaaatatttgcatgtgtggaaagcattatttgatttatttatagtatgatataatttata--ttataatgat--cagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA
                                                                        |   ||| | | |  || |  | |     |  |  |  | || ||| ||| | |  ||  |   | | ||  | || ||| ||   |||| |  ||   ||||||| || || || ||||| ||||| ||||||||||| |||||||||||| | ||||| ||||||||  | || |||||||| ||||| || || || |
gtacattatacttatttaactattgttgaatgtgacttacaaaagtagaaaacaagatctcttttttatactttttttaattagtggatattttggtcggcaaattaaactttgaaaaacatcagtaaatagag--aaaataataaatgattaatgggttatgaaaatgatagGTGAATCCGGAAGAAATTGTGTTTGGAGGATGGGACATAAGTGACATGAACTTAGCAGACGCAATGGCACGAGCCAAGGTCCTAGACATCGACCTTCAAA

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagttagtaactcaatttcattgaaaatatttgcatgtgtggaaagcattatttgatttatttatagtatgatataatt-tatattataatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA
||  || | || ||   ||| |   || | ||||    |   ||    | |  |    | | |||  | | ||  ||  || | |   |  |  | |||||||| || |||||  |||| ||||| |||||||| || |||||||||||| | |||||||| ||||| || || | ||| || || || ||  ||||||
gttggtgattagctagctttta---aacaaatttttgagacaggttttcttcttaaagtgtgttttaattttgggatcgttgtgtggaaataaaaacagGTGAATCCGGATGATGTTGTGTTTGGAGGATGGGATATAAGTGACATGAACTTAGCAGATGCCATGGCTAGAGCCAGGGTTCTTGATATCGACTTGCAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30298421|gb|CB975215.1|CB975215
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|33405434|gb|CF211061.1|CF211061
EST:     CTCCTCCCTATG                         GTGAACCCAGATGACATTGGATCTTGGGGGATGGGACATCAGTGACATGAA
genomic: CTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATT-GTTTTTGGGGGATGGGACATCAGTGACATGAA
EST: gi|110718211|gb|EE094788.1|EE094788
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|352786493|gb|FQ479102.1|FQ479102
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|110729420|gb|EE105357.1|EE105357
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|18458339|gb|BM436617.1|BM436617
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|110370782|gb|EC932929.1|EC932929
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|351028589|gb|FQ446262.1|FQ446262
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|110699399|gb|EE076363.1|EE076363
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|352781953|gb|FQ469251.1|FQ469251
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|349823419|gb|FQ423230.1|FQ423230
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|156736210|gb|EV240331.1|EV240331
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|18459446|gb|BM437724.1|BM437724
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|110711003|gb|EE087708.1|EE087708
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|351029253|gb|FQ435453.1|FQ435453
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|30254160|gb|CB971175.1|CB971175
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|110729394|gb|EE105310.1|EE105310
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTTGGGGGATGGGACATCAGTGACATGAA
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTT-GGGGGATGGGACATCAGTGACATGAA
EST: gi|294966781|gb|GW837800.1|GW837800
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTGGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|110710113|gb|EE086162.1|EE086162
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTTGGGGGATGGGACATCAGTGACATGAA
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTT-GGGGGATGGGACATCAGTGACATGAA
EST: gi|349826736|gb|FQ418827.1|FQ418827
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|349830747|gb|FQ417045.1|FQ417045
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|351025075|gb|FQ433492.1|FQ433492
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|29786214|gb|CB343821.2|CB343821
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|110728696|gb|EE104489.1|EE104489
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTTGGGGGATGGGACATCAGTGACATGAA
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTT-GGGGGATGGGACATCAGTGACATGAA
EST: gi|110686985|gb|EE063998.1|EE063998
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|110698948|gb|EE077030.1|EE077030
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|110699779|gb|EE077086.1|EE077086
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|38516563|gb|CF983738.1|CF983738
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|110707916|gb|EE084861.1|EE084861
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|30296613|gb|CB973407.1|CB973407
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|110698025|gb|EE075563.1|EE075563
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
EST: gi|18459348|gb|BM437626.1|BM437626
EST:     CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATG                         GTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC
genomic: CCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagt ... taatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaagcattatttgatttatttatagtatgatataatttatattataatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA
         atttgat  putative branch site (score: 5)
      attatttgatttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttagtaactcaatttcattgaaaatatttgcatgtgtggaaagcattatttgatttatttatagtatgatataatttatattataatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG