Sequence
atgc intronic sequence ATGC exonic sequencegtaacttacaattgatgcattaggttttgaatttgggctcccttgtgaaaatgaatttgcccatttttcatttggggtgtgcttgcagGGCTGAATGTGCAAATAATCCTGTGAGATTCTTTGCCATAGTGTCGATACAGAGATCAGGAAGTGGATGGTTTGAGACACTATTAAATAGTCATATTAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G16400.1 (Glycine max), 3'ss of exon 1
---gtaacttacaatt--gatgcattaggttttgaatttgggctcccttgtgaaaatgaatttgcccatttttcatttggggtgtgcttgcagGGCTGAATGTGCAAATAATCCTGTGAGATTCTTTGCCATAGTGTCGATACAGAGATCAGGAAGTGGATGGTTTGAGACACTATTAAATAGTCATATTAAT
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gtaataatgtgaagttttgttgtgttatggtt---attttggctt-----tgggttgggtcttgttaattaaccttttggctt----tggtagGAGTGAGTGTGCTGGTAATCCTGTGCGGTTCTTTGCCATATTGTCGAATCAGAGATCTGGCAGTGGGTGGTTTGAGACCCTTTTGAATAGCCATATTAAT
upper sequence: Vv07s0031g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G20280.1 (Glycine max), 3'ss of exon 2
---gtaacttacaattg--atgcattagg----ttttgaatttgggctcccttgtgaaaatgaatttgcccatttttcatttggggtgtgcttgcagGGCTGAATGTGCAAATAATCCTGTGAGATTCTTTGCCATAGTGTCGATACAGAGATCAGGAAGTGGATGGTTTGAGACACTATTAAATAGTCATATTAAT
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gtaataatgtgaagtttccatgtattatggttattttgatttttggctt--tggttagggta---ttgttaattgacttttttggctttg---gtagGAGTGAGTGTGCTGGTAACCCTGTGCGGTTCTTTGCCATTTTGTCGAATCAGAGATCTGGCAGTGGGTGGTTTGAGACCCTTTTGAATAGCCATATTAAT
upper sequence: Vv07s0031g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G50620.1 (Arabidopsis thaliana), 3'ss of exon 2
----gtaacttacaattgatgcattaggttttgaatttgggctcccttgtgaaaatgaatttgccca--tttttcatttggggtgtgcttg--cagGGCTGAATGTGCAAATAATCCTGTGAGATTCTTTGCCATAGTGTCGATACAGAGATCAGGAAGTGGATGGTTTGAGACACTATTAAATAGTCATATTAAT
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gtaactaatataccagttctgttcttgtctatgtttttga-ctctctttggtttgttcctttgtttaaatctttgttttgggttgtcttaaactagAGCTGAATGTGGACATAATCCGGTGAGGTACTTTGCGATATTGTCGATGCAGAGATCAGGAAGCGGTTGGTTCGAAACATTGTTGAATAGTCATAACAAT
upper sequence: Vv07s0031g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S310_50V6.2 (Physcomitrella patens), 3'ss of exon 5
----------------------------------------------------------------gtaactta-caattgatgcattaggttttgaatttgggctcccttgtgaaaatgaatttgcccatttttcatttggggtgtgcttgcagGGCTGAATGTGCAAATAATCCTGTGAGATTCTTTGCCATAGTGTCGATACAGAGATCAGGAAGTGGATGGTTTGAGACACTATTAAATAGTCATATTAAT
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gttagtttcgtaaacgttgctgcccaagtggttcactatgctcataaattccctataacactttctaaatcagcacttccttcttctcatgaaggtcactcctttcgttgtgctatgaaaggcctcttgatttcctgttcgttttgcatgcagGCAAGAGTGCACTTGCACTCCTGTGCACTATTTTGTAATATTATCAATGCAAAGATCAGGAAGTGGATGGTTTGAGACTCTACTCAATAATCACCCAAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71863121|gb|DT012176.1|DT012176EST: ATGAAAGAAATTCCCAATGTGCATTATCCGAAACCTCGAACTTTTAGCAG GGCTGAATGTGCAAATAATCCTGTGAGATTCTTTGCCATAGTGTCGATACA
genomic: ATGAAAGAAATTCCCAATGTGCATTATCCGAAACCTCGAACTTTTAGCAGgtaacttaca ... gtgcttgcagGGCTGAATGTGCAAATAATCCTGTGAGATTCTTTGCCATAGTGTCGATACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgggctcccttgtgaaaatgaatttgcccatttttcatttggggtgtgcttgcagGGCTGAATGTGCAAATAATCCTGTGAGATTCTTTGCCATAGTGTCGATACAGAGATCAGGAAGTGGATGGTTTGAGACACTATTAAATAGTCATATTAAT
aaaatgaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacttacaattgatgcattaggttttgaatttgggctcccttgtgaaaatgaatttgcccatttttcatttggggtgtgcttgcagGGCTGAATGTGCAAATAATCCTGTGAGATTCTTTGCCATAGTGTCGATACAGAGATCAGGAAGTGGATGGTTTGAGACACTATTAAATAGTCATATTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA