Sequence
atgc intronic sequence ATGC exonic sequencegtgagctcttcctctatattccttccaacttttgttcgtttcatacgaaaaatgaatgagcgaatgaaaattttctaaggagaatgtgatactgaaagagattttttttcttcttttctttttcagCGCATATGATAGGGCTGCTATCAAGTTCCGGGGAGTGGAGGCAGACATTAATTTCAGCCTTGAAGACTATGAGGAAGACTTAAAACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g00220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G39520.2 (Glycine max), 3'ss of exon 3
----------gtgagctcttcctctat-attc--cttccaacttttgttcgtttcatacgaaa---aatgaatgagcgaatgaaaattttctaaggagaatgtgatactg-----aaagagattttttttcttcttttctttttcagCGCATATGATAGGGCTGCTATCAAGTTCCGGGGAGTGGAGGCAGACATTAATTTCAGCCTTGAAGACTATGAGGAAGACTTAAAACAG
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gtgagcacttgctccctctcttcctattgttcagcttgtaatataagttttctacatcttgaacccaatccacataaaatttcgttttcttgcatataaatttaaggttcggattaataaaagtatttattttatctgtatgctcagTGCGTATGATAGAGCTGCTATTAAATTCCGGGGAGTGGAGGCAGACATCAACTTCAACATCGAAGACTATGAGGAAGACTTGAAGCAG
upper sequence: Vv07s0031g00220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G05720.1 (Glycine max), 3'ss of exon 2
-----------------------------gtgagctcttcctctatattccttccaacttttgttcgtttcatacgaaaaat-gaatgagcgaatgaaaattttctaagg----agaatgtgatactgaaagag-attttttttcttcttttctttttcagCGCATATGATAGGGCTGCTATCAAGTTCCGGGGAGTGGAGGCAGACATTAATTTCAGCCTTGAAGACTATGAGGAAGACTTAAAACAG
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gtgagcacttgctccctctctacctattgttcagcttgtaatataagttttctacttcttgaaaccaatccccataaaatttcgtttttttgcatagagatttaaggtggttcgaaacttcgaatttataaaagtatttattttatctgtcttctgctcagTGCGTATGATAGAGCAGCTATTAAATTCCGGGGAGTGGAGGCAGACATCAACTTCAACATCGAAGACTATGAGGAAGACTTGAAGCAG
upper sequence: Vv07s0031g00220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G18170.1 (Glycine max), 3'ss of exon 3
--------------------------------gtgagctcttcctctatattccttccaacttttg---ttcgtttcatacgaaaaatgaatga-gcgaatgaaaattttcta-aggagaatgtgatactgaaagagattttt---tttcttcttttctttttcagCGCATATGATAGGGCTGCTATCAAGTTCCGGGGAGTGGAGGCAGACATTAATTTCAGCCTTGAAGACTATGAGGAAGACTTAAAACAG
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gtgagcccttgcccccctcctctagtattataccaagcttgtaatata-actttttctatgtcttgaattgaacctaatctaattatcaaatattataaatcacatttcgttgtgggggaatgtgaggctcaaagaaaattgtgtattttccatctctctttgcagTGCATATGATAGAGCGGCTATTAAATTCCGAGGAGTGGAGGCGGACATTAACTTCAACATTGAAGATTATGAAGATGACTTGAAGCAG
upper sequence: Vv07s0031g00220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G18640.2 (Glycine max), 3'ss of exon 3
--------gtgagctcttcctctatattccttccaactt------ttgttcgtttcat-------acgaaaaatgaatga-----gcgaatgaaaattttcta------aggagaatgtgatactgaaagagattt---tttttcttcttttctttttcagCGCATATGATAGGGCTGCTATCAAGTTCCGGGGAGTGGAGGCAGACATTAATTTCAGCCTTGAAGACTATGAGGAAGACTTAAAACAG
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gtgagcccttgccccctcctttagtattataccaagcttgtaatattactttttccatgtcttgaaccaaatatcaaatattattgtaaatcacatttcgttgtgggccggggaattgtgagtctcaaagaaaattgtgtattttccgtctctcttttcagTGCTTATGATAGAGCGGCTATTAAATTCCGAGGAGTGGAGGCTGACATTAACTTCAATATTGAAGACTATGAAGATGACTTGAAGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttctaaggagaatgtgatactgaaagagattttttttcttcttttctttttcagCGCATATGATAGGGCTGCTATCAAGTTCCGGGGAGTGGAGGCAGACATTAATTTCAGCCTTGAAGACTATGAGGAAGACTTAAAACAG
ttttttttcttctttt CT-rich tract
attttttttcttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagctcttcctctatattccttccaacttttgttcgtttcatacgaaaaatgaatgagcgaatgaaaattttctaaggagaatgtgatactgaaagagattttttttcttcttttctttttcagCGCATATGATAGGGCTGCTATCAAGTTCCGGGGAGTGGAGGCAGACATTAATTTCAGCCTTGAAGACTATGAGGAAGACTTAAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA