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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattctttcttatagatgcaaattaaaaaattgtggatgacctgcattatttttattgaactagatgatgttcttgtaacagTGAAGCAAAAGGCAGTTTTGCGTTGACTGCCTCACCTCATGGCGATTCTGTTGAAAGTAGTGGCAGACCAGGGGGGCCTACAGTTTGTGAACCAAATAGT

Basic information

species Vitis vinifera
transcript Vv07s0005g06680.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G14060.1 (Glycine max), 3'ss of exon 3
--------------gttattctttcttatagatgcaaattaaaaaattgtggatgac-----------ctgcattatttttattgaactagatgatgttcttgtaa---cagTGAAGCAAAAGGCAGTTTTGCGTTGACTGCCTCACCTCATGGCGATTCTGTTGAAAGTAGTGGCAGACCAGGGGGGCCTACAGTTTGTGAACCAAATAGT
                || | ||||  ||  ||  |  |  |    ||||| || |            || | ||  || | |        |   |  | |||| |   ||||||||||||||| |||||||| ||||||||||| |||||||| || |||||||| |||||||  ||||| ||||  |||   |   |||| || |||| |
gttgactattcttatctagtttttcccatgcatatatgtgtatcttttgtgtattaatttttttaatgcttcgttgcttctttctcctgtcactttcctattgtgatctcagTGAAGCAAAAGGTAGTTTTGCATTGACTGCCTCCCCTCATGGTGACTCTGTTGACAGTAGTGCTAGACCCGGGGCTCCTTTGGCCAGTGAGCCTAATACT

upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G36660.1 (Glycine max), 3'ss of exon 4
---------------------------------------------gttattctttctt--atagatgcaaattaaaaaattgtg----gatgacctgc--attatttttattgaactagatgatgttcttgtaacagTGAAGCAAAAGGCAGTTTTGCGTTGACTGCCTCACCTCATGGCGATTCTGTTGAAAGTAGTGGCAGACCAGGGGGGCCTACAGTTTGTGAACCAAATAGT
                                             |||| |  ||  |  |||  | |    ||  || ||||     |||| |||    ||| ||| | |||  ||   |  |  | |  |  ||||||||||||||| |||||||  ||||||||||| |||||||| || ||||| || |||||||  ||||||||||  ||| |  || |||||||||||| |
gttggctattattttcttgtcttttttttttggtctccagtatgtgttacttgtttatgaatatctactgtgtattaatttgtttaatgatgccctatcaattctttctcttgtcctctcttctaatatgatt-cagTGAAGCAAAAGGTAGTTTTGTATTGACTGCCTCCCCTCATGGTGACTCTGTCGACAGTAGTGCTAGACCAGGGGTCCCTTCTCTTAGTGAACCAAATACT

upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G46710.1 (Glycine max), 3'ss of exon 3
-------------------------------------------------gttattctttcttatagat-----gcaaattaaaaaatt-gtggatgacctgc--attatttttattgaactagatgatgttcttgtaacagTGAAGCAAAAGGCAGTTTTGCGTTGACTGCCTCACCTCATGGCGATTCTGTTGAAAGTAGTGGCAGACCAGGGGGGCCTACAGTTTGTGAACCAAATAGT
                                                 |||| |  ||  |  | ||     |   |||||    ||    |||| |||    ||| ||| | ||   ||   |  |  | |  |  ||||||||||||||| |||||||  ||||||||||| |||||||| || ||||| || |||||||  ||||||||||  ||| |  || ||||||||||||  
gttgactattattttcttgtctttttcttttgttttgtctccagtacgtgttacttgtttatgaatatctactgtgtattaattcgtttaatgatgccctatcaattttttctcttttcctctcttctaatatgatt-cagTGAAGCAAAAGGTAGTTTTGTATTGACTGCCTCCCCTCATGGTGACTCTGTCGACAGTAGTGCTAGACCAGGGGTCCCTTCTCTTAGTGAACCAAATACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattgtggatgacctgcattatttttattgaactagatgatgttcttgtaacagTGAAGCAAAAGGCAGTTTTGCGTTGACTGCCTCACCTCATGGCGATTCTGTTGAAAGTAGTGGCAGACCAGGGGGGCCTACAGTTTGTGAACCAAATAGT
                                         tgttctt  CT-rich tract
                  attatttttattgaac  TA-rich tract