1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttcatttattgaaatcaaagaatgcaccataattgcataacataatatcaaccattaactaaatatcttatacttgaaagcattttggtttatatcatagGGCAATTTGGGTTGGGCCTACATGCAAAAATCTAAGTTCATAGCAGCCGAGGTAGTGTACAAGAAAGCTCAAATGATTGATCCAGACGCAAACAAGGCTT
species | Vitis vinifera |
transcript | Vv07s0005g05720.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
tatcaaccattaactaaatatcttatacttgaaagcattttggtttatatcatagGGCAATTTGGGTTGGGCCTACATGCAAAAATCTAAGTTCATAGCAGCCGAGGTAGTGTACAAGAAAGCTCAAATGATTGATCCAGACGCAAACAAGGCTT
aactaaa putative branch site (score: 2)
attaactaaatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatttattgaaatcaaagaatgcaccataattgcataacataatatcaaccattaactaaatatcttatacttgaaagcattttggtttatatcatagGGCAATTTGGGTTGGGCCTACATGCAAAAATCTAAGTTCATAGCAGCCGAGGTAGTGTACAAGAAAGCTCAAATGATTGATCCAGACGCAAACAAGGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - -aaatcaa
- - - - - - - - - -gaatgca
- - - - - - - - - - - - - - - - - - - aacataa
- - - - - - - - - - - - - - - - - - - - - - - -tcaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagca