Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgtattccctgctcccactcgatgttaaattgattcatatgcttgaataatgagttggacatgaatatttcaataataatgtgttttaaaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGGAACTGGAAATCCCATTGATGACTGCTGGCGCTGTGACCCACATTGGCAA

Basic information

species Vitis vinifera
transcript Vv07s0005g05520.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71871867|gb|DT020922.1|DT020922
EST:     AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATAT                         GAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
genomic: AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATATgtgagcctct ... aaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
EST: gi|77588015|gb|DV223218.1|DV223218
EST:     AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATAT                         GAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
genomic: AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATATgtgagcctct ... aaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
EST: gi|71863932|gb|DT012987.1|DT012987
EST:     AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATAT                         GAGTATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
genomic: AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATATgtgagcctct ... aaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
EST: gi|110698327|gb|EE075718.1|EE075718
EST:     AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATAT                         GAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
genomic: AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATATgtgagcctct ... aaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
EST: gi|161711609|gb|FC061259.1|FC061259
EST:     AATCCAGAGGAGGTTGCTTCCATGGTTGATAT                         GAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
genomic: AATCCAGAGGAGGTTGCTTCCATGGTTGATATgtgagcctct ... aaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
EST: gi|110685770|gb|EE062781.1|EE062781
EST:     AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATAT                         GAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
genomic: AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATATgtgagcctct ... aaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
EST: gi|110684760|gb|EE062403.1|EE062403
EST:     AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATAT                         GAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
genomic: AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATATgtgagcctct ... aaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
EST: gi|33403461|gb|CF209088.1|CF209088
EST:     AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATAT                         GAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
genomic: AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATATgtgagcctct ... aaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
EST: gi|110389509|gb|EC954352.1|EC954352
EST:     AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATAT                         GAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
genomic: AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATATgtgagcctct ... aaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
EST: gi|71863860|gb|DT012915.1|DT012915
EST:     AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATAT                         GAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
genomic: AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATATgtgagcctct ... aaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
EST: gi|110698031|gb|EE075577.1|EE075577
EST:     AATGTG-ACGCCAAGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATAT                         GAGCATCTTTAATACCACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
genomic: AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATATgtgagcctct ... aaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG
EST: gi|294964497|gb|GW838300.1|GW838300
EST:     AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATAT                         GAGCATCCGTAATAGTACGGAAAGGAGGAACCTGAGTTATTTCTCATGTGG
genomic: AATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATATgtgagcctct ... aaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaataatgagttggacatgaatatttcaataataatgtgttttaaaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGGAACTGGAAATCCCATTGATGACTGCTGGCGCTGTGACCCACATTGGCAA
                                                ttttc  CT-rich tract
               acatgaatatttcaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctgtattccctgctcccactcgatgttaaattgattcatatgcttgaataatgagttggacatgaatatttcaataataatgtgttttaaaattttcagGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGGAACTGGAAATCCCATTGATGACTGCTGGCGCTGTGACCCACATTGGCAA

- - - - ccctgct
- - - - - - - -cccactc
- - - - - - - - - - - - - - aaattga
- - - - - - - - - - - - - - - - - - -catatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -gagttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataataa