Sequence
atgc intronic sequence ATGC exonic sequence...caggaactgccatggaggttgtaaacataccatgggcttgtactattttgtgggggaaaggatattaatgcatcttttatcatcgtttttgtcctactagGTGCTGCTGACTACCCTGGCTTCCGTGGACTCCTAAAGCAACTTGTTGGTCCTTTGAGCATACAATTATCTGATCGTAGGTCCAGCATTGTGAAGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G04850.1 (Glycine max), 3'ss of exon 6
---caggaactgccatggaggttgtaaacataccatgggcttgtactattttgtgggggaaaggatattaatgcatcttttatcatcgtttttgtcctactagGTGCTGCTGACTACCCTGGCTTCCGTGGACTCCTAAAGCAACTTGTTGGTCCTTTGAGCATACAATTATCTGATCGTAGGTCCAGCATTGTGAAGCAG
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gtattgtaattttcactgagatattaaa-atgcaatgcacctttatctgtttttgtctgtggcgtgaatgattaatatttattgaatattctc--ctgatcagGTGCTGCTGATTATCCATGTTTCTTTGGACTCCTGAAGCAGCTTGTTGGACCTTTAAGCACACAATTGTCAGATCGAAGGTCAAGCATTGTGAAGCAG
upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G19230.1 (Glycine max), 3'ss of exon 6
---caggaactgccatggaggt-tgtaaacataccatgggcttgtactattttgtgggggaaaggatattaatgcatcttttatcatcgtttttgtcctactagGTGCTGCTGACTACCCTGGCTTCCGTGGACTCCTAAAGCAACTTGTTGGTCCTTTGAGCATACAATTATCTGATCGTAGGTCCAGCATTGTGAAGCAG
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gtattgtaattttcactgagatgttaaaatgcaatatgactttatctgtttttgtctgtggcatgaa--tgatcaatatttattgaatattctctt--tatcagGTGCTGCTGATTATCCATGTTTCTTTGGACTCCTGAAGCAGCTTGTTGGACCTTTAAGCACACAATTGTCAGATCGAAGGTCTAGCATTGTGAAGCAG
upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G32710.1 (Glycine max), 3'ss of exon 6
------caggaactgccatggaggttgtaaacataccatgggcttgtactattttgtgggggaaaggatattaatgcatcttttatcatcgtttttgtcctactagGTGCTGCTGACTACCCTGGCTTCCGTGGACTCCTAAAGCAACTTGTTGGTCCTTTGAGCATACAATTATCTGATCGTAGGTCCAGCATTGTGAAGCAG
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gattaattgtaatttccactgagccaataaattaaatgtaa-tacattttcttttcctgtggcatgattattga---atatcttcttattactttcttc--aacagGTGCTGTGGATTATCCATGTTTTCGTGGGCTCCTGAAGCAACTTGTTGGACCTTTAAGCACACAATTGTCAGACCGAAGATCTACCATTGTGAAGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttgtgggggaaaggatattaatgcatcttttatcatcgtttttgtcctactagGTGCTGCTGACTACCCTGGCTTCCGTGGACTCCTAAAGCAACTTGTTGGTCCTTTGAGCATACAATTATCTGATCGTAGGTCCAGCATTGTGAAGCAG
tattaat putative branch site (score: 2)
tttttgtcct putative PPT
atattaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caggaactgccatggaggttgtaaacataccatgggcttgtactattttgtgggggaaaggatattaatgcatcttttatcatcgtttttgtcctactagGTGCTGCTGACTACCCTGGCTTCCGTGGACTCCTAAAGCAACTTGTTGGTCCTTTGAGCATACAATTATCTGATCGTAGGTCCAGCATTGTGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - -ccatgga
- - - - - - - - - - - aaacata
- - - - - - - - - - - - - - - catgggc
- - - - - - - - - - - - - - - - - - - - - - - - -gtggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taatgca