Sequence
atgc intronic sequence ATGC exonic sequence...catagcattaatggaattcattttctggttctatcttacatcaaaagaaatggagctttggttgaatatcttgtacattacccatgtcttggtattttagGTGCTGACAAGGGAAAGGGACCTCTCGACTGGGATGCACGGATGAAGATTGCCCTTGGTGCAGCAAGAGGATTGGCTTATCTTCATGAAGATTCTAATCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g04710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G04700.1 (Glycine max), 3'ss of exon 4
catagcattaatggaattcattttctggttcta----tcttacatcaaaagaaatggagctttggttgaatatcttgtacattacccatgtct-tggtattttagGTGCTGACAAGGGAAAGGGACCTCTCGACTGGGATGCACGGATGAAGATTGCCCTTGGTGCAGCAAGAGGATTGGCTTATCTTCATGAAGATTCTAATCC
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---gtaattggttacatattttctttggttttgggtgtgtgccgcttgttcaatttataatgccttgccatgtgttaaattgaattcttgttaatgatcctgcagGTGATGACAAGAAAAGGAGCCCTCTAAATTGGGAAGCACGGACAAAAATTGCCCTTGGATCTGCAAGAGGATTGGCTTATCTACACGAAGATTCTACTCC
upper sequence: Vv07s0005g04710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G35390.1 (Glycine max), 3'ss of exon 7
catagcattaatggaattcattttctggttctatcttacatcaaaagaaatggagctttggttgaatatcttgtacatt---acccatgtct-tggtattttagGTGCTGACAAGGGAAAGGGACCTCTCGACTGGGATGCACGGATGAAGATTGCCCTTGGTGCAGCAAGAGGATTGGCTTATCTTCATGAAGATTCTAATCC
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-gtaacat-attttcatcagctcaagacgtgcagcccatgt-acaatttgtgtttcttcgtt--atcttttaattcatttaaatgcttgttaatgatattacagGTGACGACAAGATAAAGGGAATGCTAGATTGGGAAGCAAGGATGAAGATTGCCCTAGGAGCTGCAAGAGGACTGGCCTATCTTCACGAGGATTCCAATCC
upper sequence: Vv07s0005g04710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G32640.1 (Glycine max), 3'ss of exon 7
catagcattaatggaattcattttctggttctat-cttaca-tcaaaagaaatggagctttggttgaatatcttgtacattaccca--tgtct-----tggtattttagGTGCTGACAAGGGAAAGGGACCTCTCGACTGGGATGCACGGATGAAGATTGCCCTTGGTGCAGCAAGAGGATTGGCTTATCTTCATGAAGATTCTAATCC
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----------gtaacatattttcatcagctcaagacgtgcagtccatgtacaatttgtgtttctttgctgtcttttaaattatttaaatgtttgttaatgatattacagGTGATGACAAGATAAAGGGAATGCTAGATTGGGAAGCAAGGATGAAAATTGCACTAGGAGCTGCAAGAGGATTGGCCTATCTTCACGAGGATTCCAATCC
upper sequence: Vv07s0005g04710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G19030.1 (Glycine max), 3'ss of exon 5
-catagcattaatggaattcattttctggttctatcttacatcaaaagaaatggagctttggttgaatatcttgtacattacccatgtct-tggtattttagGTGCTGACAAGGGAAAGGGACCTCTCGACTGGGATGCACGGATGAAGATTGCCCTTGGTGCAGCAAGAGGATTGGCTTATCTTCATGAAGATTCTAATCC
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gtaattggctacatattttctttttttttgggtgtgtgccagttgttcaatttataattccttgccatatgttaaattgaattattgttaatgatcctgcagGTGATGACAAGAAAAAGAGCCCTCTAAATTGGGAAGCACGGACAAAAATTGCTCTTGGAGCTGCAAGAGGATTGGCTTATCTACACGAGGATTCTATTCC
upper sequence: Vv07s0005g04710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G20300.1 (Arabidopsis thaliana), 3'ss of exon 6
catagcattaatggaattcattttctg-gttctatcttacatcaaaa--gaaatggagctttggttgaatatcttgtacattacccatgtcttggtattttagGTGCTGACAAGGGAAAGGGACCTCTCGACTGGGATGCACGGATGAAGATTGCCCTTGGTGCAGCAAGAGGATTGGCTTATCTTCATGAAGATTCTAATCC---------------
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-------gtgacatattcttttctctgcacttttaataacaatatatcccaattatatccatcacttctcgttgcat-caccacctaaaacctggctttccggttgttgacaaaacagAAGGAACGCTTGATTGGGATGCGCGGTTGAAGATTGCACTTGGAGCAGCGAGAGGACTGGCTTATCTCCATGAAGATTCAAATCCCCGAGTAATCCACCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71864431|gb|DT013486.1|DT013486EST: CCTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCTCACTTGCATG GTCCTGACAAGGGAAAGGGACCTCTCGACTGGGATGCACGGATGAAGATTG
genomic: CCTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCTCACTTGCATGgtaaatttct ... ggtattttagGTGCTGACAAGGGAAAGGGACCTCTCGACTGGGATGCACGGATGAAGATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agaaatggagctttggttgaatatcttgtacattacccatgtcttggtattttagGTGCTGACAAGGGAAAGGGACCTCTCGACTGGGATGCACGGATGAAGATTGCCCTTGGTGCAGCAAGAGGATTGGCTTATCTTCATGAAGATTCTAATCC
tatttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catagcattaatggaattcattttctggttctatcttacatcaaaagaaatggagctttggttgaatatcttgtacattacccatgtcttggtattttagGTGCTGACAAGGGAAAGGGACCTCTCGACTGGGATGCACGGATGAAGATTGCCCTTGGTGCAGCAAGAGGATTGGCTTATCTTCATGAAGATTCTAATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
catagca
- - - - -aatggaa
- - - - - - - - - - -tttctgg
- - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - tggagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccatgt