Sequence
atgc intronic sequence ATGC exonic sequencegtaaattttaacttgtcttttcttttcttttctctattttacatttttgcaccgtcttttttatccgtaattatgtagccaggcttctaactgtactccaatcctatttcatactcacagTGGTGACCACACTGTAAAGATAATTGATTGCCATACTGGAAGCTGCTTAAAGGTGTTAACTGGTCATCGAAGGACACCTTGGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G35370.3 (Glycine max), 3'ss of exon 3
gtaaattttaacttgtcttttcttttcttttctctattttacatttttgcaccgtcttttttatccgtaattatgtagccaggcttctaactgtactccaatcctatttcatactcacagTGGTGACCACACTGTAAAGATAATTGATTGCCATACTGGAAGCTGCTTAAAGGTGTTAACTGGTCATCGAAGGACACCTTGGGTG
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-------------------------------gtaagttttaactagttgatc--tcctctttactaatttgaatctatgaacttttgtgattgaatcttg---ttatgtgttatgtgcagTGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTGTTAGTTGGTCATAGGAGAACGCCTTGGGTG
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G32620.2 (Glycine max), 3'ss of exon 3
gtaaattttaacttgtcttttcttttcttttctctattttacatttttgcaccgtcttttttatccgtaattatgtagccaggcttctaactgtactccaatcctatttcatact---cacagTGGTGACCACACTGTAAAGATAATTGATTGCCATACTGGAAGCTGCTTAAAGGTGTTAACTGGTCATCGAAGGACACCTTGGGTG
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-------------------------------gtaagttttaactagttgatc--tcctctttac---taatt-tgaatctatgaactt---tgtgatcggatcttgttatgtgctatgtgcagCGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTATTAGTTGGTCATAGGAGAACACCTTGGGTG
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G04140.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaaattttaacttgtcttttcttttcttttctctattttacatttttgcaccgtcttttttatccgtaattatgtagccaggcttctaactgtactccaatcctatttcata-ctcacagTGGTGACCACACTGTAAAGATAATTGATTGCCATACTGGAAGCTGCTTAAAGGTGTTAACTGGTCATCGAAGGACACCTTGGGTG
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----------------------------------------gtaagtatcatgagtcgtatttgttggaattttttt--tttgtttgctaatgagtttttttttgtatttttaatcttgtagTGGTGACCACACTGTAAAAATTATTGATTGTGAGACAGGAAAATGCTTAAAAATATTGACTGGCCATCGAAGGACACCCTGGGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgtaattatgtagccaggcttctaactgtactccaatcctatttcatactcacagTGGTGACCACACTGTAAAGATAATTGATTGCCATACTGGAAGCTGCTTAAAGGTGTTAACTGGTCATCGAAGGACACCTTGGGTG
ttctaac putative branch site (score: 1)
tatttcata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaattttaacttgtcttttcttttcttttctctattttacatttttgcaccgtcttttttatccgtaattatgtagccaggcttctaactgtactccaatcctatttcatactcacagTGGTGACCACACTGTAAAGATAATTGATTGCCATACTGGAAGCTGCTTAAAGGTGTTAACTGGTCATCGAAGGACACCTTGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT