Sequence
atgc intronic sequence ATGC exonic sequence...ttagatttaattatctacagaatttagtttattatctagactctgggggtcatttgatctggttttcatagtcatcactctttctataatttgtattcagGATGTTCCTGGGCTCTGCGAGGAGGCTCAGAATCATGAGGACATCTGATGCTAATGGACTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g04380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G18910.1 (Glycine max), 3'ss of exon 3
ttagatttaattatctacagaatttagtttattatctagactctgggggtcatttgatct-ggttttcatagtcatcactctttctat---aatttgtattcagGATGTTCCTGGGCTCTGCGAGGAGGCTCAGAATCATGAGGACATCTGATGCTAATGGACTTG
|||| | || | || |||| | | | | || | || ||| | ||| ||| ||||| |||| || | || ||| | ||||||||||||| |||| | ||||||||| |||||||||||||||||||| |||||||||||||
cattttttagctttcctttgtat--gatttaacact--ggttacgaggatatttgtttctcagctttgatattcatctatcttgctctttcaaattgcaatcagGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTG
upper sequence: Vv07s0005g04380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G04610.1 (Glycine max), 3'ss of exon 3
ttagatttaatt---atctacagaatttag--tttattatctagactctgggggtcatttgatctggttttcatagtcatcactctttctataatttgtattcagGATGTTCCTGGGCTCTGCGAGGAGGCTCAGAATCATGAGGACATCTGATGCTAATGGACTTG
|| ||||| | | | | ||||| | |||| || | | || | || | || | ||||| | ||||||| || ||| ||||||||||| | |||| | ||||||||| |||||||||||||||||||| |||||||||||||
tttcatttagcttgtctttttatgatttaacactggttatgaggatctttgt--tcctctgctttgatattcatctatcttgctctttc---aaattgctatcagGATGTTCTTTAGCTCAGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTG
upper sequence: Vv07s0005g04380.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G35180.4 (Glycine max), 3'ss of exon 3
---ttagatttaattatctacagaatttagtttattatctagactctgggggtcatttgatctggttttcatagtcatcactctttctataatttgtattcagGATGTTCCTGGGCTCTGCGAGGAGGCTCAGAATCATGAGGACATCTGATGCTAATGGACTTG
| |||||| | || | || || | ||| | | || | | || | || | | | | | || |||| | | ||||||||||||| ||||| ||||||||| ||||||||||||||| |||| | |||||||||||
tcttgagatttgagaattgcaattgatttattgaggcgtaggacctcttgttttatctagtttgatattttt--ctacctttgtccttaaaatt-gcaatcagGATGTTCCTTAACTCTGTGAGGAGGCTAAGAATCATGAGGACACCTGAAGATAATGGACTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggggtcatttgatctggttttcatagtcatcactctttctataatttgtattcagGATGTTCCTGGGCTCTGCGAGGAGGCTCAGAATCATGAGGACATCTGATGCTAATGGACTTG
atttgat putative branch site (score: 5)
tttctataatttgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttagatttaattatctacagaatttagtttattatctagactctgggggtcatttgatctggttttcatagtcatcactctttctataatttgtattcagGATGTTCCTGGGCTCTGCGAGGAGGCTCAGAATCATGAGGACATCTGATGCTAATGGACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - gggggtc