1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctgtcaaaagttttatgaagttcacagaattcaccgactcttgtcattttagatggttgttgctcaggccgatttcattggaaatgttttttgtatgcagGTGTTTATGCAGGAGATCCTTCAAAACTGAGCATGAAAGCAGCATTTGGAAAAGTTTGGAAGCTTGAGCAGAAGGGTGGTAGTATAATTGGTGGCACCTT
species | Vitis vinifera |
transcript | Vv07s0005g02540.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAG GTGTTTATGCAGGAGATCCTTCAAAACTGAEST: gi|352764189|gb|FQ471169.1|FQ471169
genomic: TAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAGgtgctaatca ... ttgtatgcagGTGTTTATGCAGGAGATCCTTCAAAACTGA
EST: TAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAG GTGTTTATGCAGGAGAACCTTCAAAACTGAGCATGAAAGCAGEST: gi|110381438|gb|EC934459.1|EC934459
genomic: TAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAGgtgctaatca ... ttgtatgcagGTGTTTATGCAGGAGATCCTTCAAAACTGAGCATGAAAGCAG
EST: TAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAG GTGTTTATGCAGGAGATCCTTCAAAACTGAGCATGAAAGCAGCATTTGGAA
genomic: TAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAGgtgctaatca ... ttgtatgcagGTGTTTATGCAGGAGATCCTTCAAAACTGAGCATGAAAGCAGCATTTGGAA
attttagatggttgttgctcaggccgatttcattggaaatgttttttgtatgcagGTGTTTATGCAGGAGATCCTTCAAAACTGAGCATGAAAGCAGCATTTGGAAAAGTTTGGAAGCTTGAGCAGAAGGGTGGTAGTATAATTGGTGGCACCTT
tgtttttt CT-rich tract
aaatgttttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtcaaaagttttatgaagttcacagaattcaccgactcttgtcattttagatggttgttgctcaggccgatttcattggaaatgttttttgtatgcagGTGTTTATGCAGGAGATCCTTCAAAACTGAGCATGAAAGCAGCATTTGGAAAAGTTTGGAAGCTTGAGCAGAAGGGTGGTAGTATAATTGGTGGCACCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
ctgtcaa
- - - - - - - - - - - cacagaa
- - - - - - - - - - - - - - - -caccgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attggaaa