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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctgactccaattattgattcccatttcagcagtggctctgcttgttgcttttactctatattctcttaagattttattcatggtccttttctcctttatgctgcagATTTTTTCAACTGGAACAGAGTCAAACTTAGGTACTGTGATGGCGCATCTTTTAGTGGGGAAGGTCAAAATAAG

Basic information

species Vitis vinifera
transcript Vv07s0005g02440.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G38430.2 (Glycine max), 3'ss of exon 3
------gtcctgactccaattattgattcccatttcagcagtggct-ctgcttgttgcttttactctatattctcttaagattttattcatggtccttttctcctttatgctgcagATTTTTTCAACTGGAACAGAGTCAAACTTAGGTACTGTGATGGCGCATCTTTTAGTGGGGAAGGTCAAAATAAG
       || | ||   |   ||   | |    ||||    |||    | |  | |    |||||| |   |||  |  | | |  ||  ||    | || || | | |||  ||||||| || |||||||||||||| ||| |  ||||||||||||| |||||||| ||||| ||  |||||||  ||
gtttttctctttaccttacgcatgcttgctttattcacttctggagattacaagatatgcttactcaag--tcttgtgtgttctcttttttgcgtatattttcttgtgtgc-acagATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGAGCATCTTTCAGTGGAGATAGTCAAAACGAG

upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G27960.2 (Glycine max), 3'ss of exon 2
------------------gtcctgactccaattattgattcccatttcagcagtggctctgcttgttgcttttact-ctatattctcttaagattttattc-atggtccttttct-------cctttatgctgcagATTTTTTCAACTGGAACAGAGTCAAACTTAGGTACTGTGATGGCGCATCTTTTAGTGGGGAAGGTCAAAATAAG
                    | ||  | || || || | |    ||  |  |    |||  ||  | |    | |   ||| |   || |||  | | |||  |  |  || | |       | |  ||| | ||||||| || |||||||| ||||| ||| |  ||||||||||||| |||||||| ||||| ||  || || || ||
gtttttccctttatcttaaacatgcgtgcattttttaactgtagttcaattaaaatctcccctcctggaggctgcaattatgtatactcaagtctgtgttctgtcatttttctgtatgtaatcttccatg-tacagATTTCTTTAACTGGAATAGAGTTAAATTACGGTACTGTGATGGAGCATCTTTCAGTGGAGATAGTGAAGATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactctatattctcttaagattttattcatggtccttttctcctttatgctgcagATTTTTTCAACTGGAACAGAGTCAAACTTAGGTACTGTGATGGCGCATCTTTTAGTGGGGAAGGTCAAAATAAG
                         ttcatggtccttttct  CT-rich tract
     tatattctcttaagat  TA-rich tract