Sequence
atgc intronic sequence ATGC exonic sequence...tgaattatacaagaggggcatgttaactaatgacataaaccttaattgaattttatggggcactttagcttaagggtctgattgatttttgatatcacagGGTGGTTTTGATGTCTGCCACTGCTGATATCGCAAGATACAGGGATTATTTTAAGGATCTTGGTAGGGGTGAAAGAGTAGAGGTGCTTGCGATTCCTAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g00310.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g15300.2 (Oryza sativa), 3'ss of exon 3
------------------------------------tgaattatacaagaggggc-atgttaactaatgacat-aaaccttaattgaattttatggggcactttagctta-agggtctgattgatt--tttgatatcacagGGTGGTTTTGATGTCTGCCACTGCTGATATCGCAAGATACAGGGATTATTTTAAGGATCTTGGTAGGGGTGAAAGAGTAGAGGTGCTTGCGATTCCTAAT
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gtaattgctgcagtgacctgctttaatgctttccattaaaccatcttttagtagtgatgattccaatccaccttaaaaactgactgccttactttcttcctgctgattgataagacgtgtgtcattcctctcttgacatagGTTGATTTTGATGTCTGCGACTGCTGATATCACAAGATATAAGGATTACTTCAGAGATCTTGGAAGGGGTGAAAGGGTTGAGGTGATTGCCATTCCTAGC
upper sequence: Vv07s0005g00310.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G47680.1 (Arabidopsis thaliana), 3'ss of exon 3
--------------------------------------------------------------------tgaattatacaagaggggcatgttaactaatgacataa------accttaattgaatt-ttatggggcactttagcttaagggtctgattgatt----------tttgat--atcacagGGTGGTTTTGATGTCTGCCACTGCTGATATCGCAAGATACAGGGATTATTTTAAGGATCTTGGTAGGGGTGAAAGAGTAGAGGTGCTTGCGATTCCTAAT
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gttataacccttttctacaacatgatgtaattactttaaggttcttaaattgtttcgcgtggttgtgtttgctgatagaagataagtcagttctatactataccgattcattacttcaaccgtgttatcatcgataacgtttgtattgaggtcatggttattaaagaggtgatttgattaattacagGGTGGTCTTGATGTCTGCAACTGCTGATATAACAAGGTACAGAGACTACTTTAAAGAACTAGGCAGGGGTGAACGCGTAGAAGTAGTTGCTATTCCTAGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaattttatggggcactttagcttaagggtctgattgatttttgatatcacagGGTGGTTTTGATGTCTGCCACTGCTGATATCGCAAGATACAGGGATTATTTTAAGGATCTTGGTAGGGGTGAAAGAGTAGAGGTGCTTGCGATTCCTAAT
ttttgat putative branch site (score: 4)
attgatttttgatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaattatacaagaggggcatgttaactaatgacataaaccttaattgaattttatggggcactttagcttaagggtctgattgatttttgatatcacagGGTGGTTTTGATGTCTGCCACTGCTGATATCGCAAGATACAGGGATTATTTTAAGGATCTTGGTAGGGGTGAAAGAGTAGAGGTGCTTGCGATTCCTAAT
- - - - acaagag
- - - - - - - - -gcatgtt
- - - - - - - - - - - - aactaat
- - - - - - - - - - - - - - - - - ataaacc
- - - - - - - - - - - - - - - - - - - - - -aattgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - ttatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg