Sequence
atgc intronic sequence ATGC exonic sequencegtgagttgtgactctgcaaattgcctttttcttgattggaaattttgttggtatgctgctcttactaaaatgtaactttgctttcagCAATCCAGGTTCCAGGCAATGTCAGACTCCATTGTTACAAAGAATATCCTTTTTCATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g00120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G17370.1 (Glycine max), 3'ss of exon 3
gtgagttgtgactctgcaaattgcctttttcttgattggaaattttgttggtatgct--gctcttactaaaatgt-aactttgctttcagCAATCCAGGTTCCAGGCAATGTCAGACTCCATTGTTACAAAGAATATCCTTTTTCATA
|||||||||| | | || | | || ||| | ||| | |||| | || || |||| | || |||| || |||||| ||||||||| ||||||| |||||||||||||||||||
gtgagttgtgtagc-ataggtt-cttagagctgcatttctgacttttataatatgtttcactgttgctaactggagaattttgtttccagCAAAATAGGTTCCAGACAATGTCCGACTCCATTGTTACAAAGA---------------
upper sequence: Vv07s0005g00120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G02430.1 (Glycine max), 3'ss of exon 3
gtgagttgtg-actctgcaaattgcctttttcttgattggaaattttgttggtatgctgctcttactaaaatgt-aactttgctttcagCAATCCAGGTTCCAGGCAATGTCAGACTCCATTGTTACAAAGAATATCCTTTTTCATA
|||||||||| | ||| | | | | | || ||| | | | || || |||| | || |||| || |||||| ||||||||| ||||||| |||||||||||||||||||
gtgagttgtgtagtctaggttcttagagctgcattttctgacttttagaatatgtttcactgttgctaactggagaattttgtttccagCAAAATAGGTTCCAGACAATGTCCGACTCCATTGTTACAAAGA---------------
upper sequence: Vv07s0005g00120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G15802.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagttgtgactctgcaaattgcctttttcttgattggaa--attttgttggtatgctgctcttactaaaatgtaac----tttgc---tttcagCAATCCAGGTTCCAGGCAATGTCAGACTCCATTGTTACAAAGAATATCCTTTTTCATA
|| ||| | || | || ||| | |||||| || | || | | | || | |||| | |||| ||||||||| ||||||||||| ||||||| |||||||| | |||||||
gtaggtttttcagctttta--tgtcttcgtaggccttggaattataccttcaataggtagattttgattaaatttggtcacatttgtgtgtttcagCAAACCAGGTTCCAGACAATGTCGGACTCCATCATCACAAAGA--------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattggaaattttgttggtatgctgctcttactaaaatgtaactttgctttcagCAATCCAGGTTCCAGGCAATGTCAGACTCCATTGTTACAAAGAATATCCTTTTTCATA
ctttgctttc CT-rich tract
ttactaaaatgtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagttgtgactctgcaaattgcctttttcttgattggaaattttgttggtatgctgctcttactaaaatgtaactttgctttcagCAATCCAGGTTCCAGGCAATGTCAGACTCCATTGTTACAAAGAATATCCTTTTTCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA