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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttgtcttattgaacacattggatgcaaattttttagatttagaaagtgtcttaacagttctaatgttttgttttgttggatgtgcagGTGTGGGATGATTGTGAAG

Basic information

species Vitis vinifera
transcript Vv06s0080g00450.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g00450.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G27480.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagtcttgtcttattgaacacattggatgcaaattttttagatttagaaagt--gtcttaacagttctaatgttttgttttgttggatgtgcagGTGTGGGATGATTGTGAAG
|||||| || | |   ||    ||| |  |       || |  ||||  | | |  |  | | | |||    |   |  |||||||     ||||||||||||||||||||||||
gtaagttttctgta--tgttttcatcgattcttgcggttcttaatttgtatactaagcatcatcggtttgtttccctcattttgttc----tgcagGTGTGGGATGATTGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110371917|gb|EC936052.1|EC936052
EST:     GATGATCGAAGTGGACGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGA                         GTGTGGGATGATTGTGAAG
genomic: GATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGAgtaagtcttg ... ggatgtgcagGTGTGGGATGATTGTGAAG
EST: gi|122691258|gb|EC970784.1|EC970784
EST:     GATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGA                         GTGTGGGATGATTGTGAAG
genomic: GATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGAgtaagtcttg ... ggatgtgcagGTGTGGGATGATTGTGAAG
EST: gi|122691312|gb|EC972650.1|EC972650
EST:     GATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGA                         GTGTGGGATGATTGTGAAG
genomic: GATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGAgtaagtcttg ... ggatgtgcagGTGTGGGATGATTGTGAAG
EST: gi|110386117|gb|EC950691.1|EC950691
EST:     GATGATCGAAGTGGACGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGA                         GTGTGGGATGATTGTGAAG
genomic: GATGATCGAAGTGGCCGGAGGGTTGAACTCAATTTTGACAGTTTTGTTGAgtaagtcttg ... ggatgtgcagGTGTGGGATGATTGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagatttagaaagtgtcttaacagttctaatgttttgttttgttggatgtgcagGTGTGGGATGATTGTGAAG
                         ttctaat  putative branch site (score: 2)
                            taatgttttgtttt  TA-rich tract