Sequence
atgc intronic sequence ATGC exonic sequence...gtccatggaaaatcatatcgattcatccatcacaggagtcttttcttttttaaatgattctgatcaattaaaattttacctttcttatcgtcatttacagTATTACTGGGAGCAAGCTGAATTTGACATCATTCAACGCAAGACAAGAATTAGCCTCCATTTTCATCTCCAGAAACAGCAGAGAAAACTTCGCCATGCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0080g00230.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G19100.1 (Glycine max), 3'ss of exon 3
gtccatggaaaatcatatcga--ttcatccatcacaggagtcttttcttttttaaatgattctg---atcaattaaaattttacctttcttatcgtcatttacagTATTACTGGGAGCAAGCTGAATTTGACATCATTCAACGCAAGACAAGAATTAGCCTCCATTTTCATCTCCAGAAACAGCAGAGAAAACTTCGCCATGCAT
| | | | || || || ||| | || | || | || | | || | ||| | ||| || | | ||| | ||| || | ||||| |||||||||||||||||||| || |||||||| |||||||| |||||||||||||||||| | |||| | || |||||||||||||||||||
---taagtatattcttactgaatttctttgattatcaatgt-tgaagttgtgaatattctcctgtatgtattttatgatgtaaagtttgtaatcaa-atctgtagTATGTATGGGAGCAAGCTGAATTTGATATTATTCAACGGAAGACAAGGATTAGCCTCCATTTTCATATGAAGAAGGAACAAAGAAAACTTCGCCATGCAT
upper sequence: Vv06s0080g00230.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G09340.1 (Glycine max), 3'ss of exon 3
gtccatggaaaatcatatcgattcatccatcacaggagtcttttcttttttaa-atgattctg---atcaattaaaattttacctttcttatcgtcatttacagTATTACTGGGAGCAAGCTGAATTTGACATCATTCAACGCAAGACAAGAATTAGCCTCCATTTTCATCTCCAGAAACAGCAGAGAAAACTTCGCCATGCAT
| | | | || || || | | | || || | || || || ||| || ||| || | | | || | ||| || | ||||| |||||||||||||||||||| || |||||||| |||||||| |||||||||||||||||| | |||| | || |||||||||||||||||||
---taagtatattcttactgaatttctttgattgtcaatattgaagttgtgaatattatcctgtatatattttatgatgtgaacgttgtaatcaa-atctgtagTATGTATGGGAGCAAGCTGAATTTGATATTATTCAACGGAAGACAAGGATTAGCCTCCATTTTCATATGAAGAAGGAACAAAGAAAACTTCGCCATGCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttaaatgattctgatcaattaaaattttacctttcttatcgtcatttacagTATTACTGGGAGCAAGCTGAATTTGACATCATTCAACGCAAGACAAGAATTAGCCTCCATTTTCATCTCCAGAAACAGCAGAGAAAACTTCGCCATGCAT
ttctgat putative branch site (score: 3)
cctttcttatcgtc putative PPT
taaatgattctgatca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtccatggaaaatcatatcgattcatccatcacaggagtcttttcttttttaaatgattctgatcaattaaaattttacctttcttatcgtcatttacagTATTACTGGGAGCAAGCTGAATTTGACATCATTCAACGCAAGACAAGAATTAGCCTCCATTTTCATCTCCAGAAACAGCAGAGAAAACTTCGCCATGCAT
- - - ggaaaat
- - - - - - - - - - - tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattaaa