1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttaggagggttttctttagtgcagctgtaagttgtaacttttgatttttgggctcataggaatattcaccttgcagGTCAAGTTAATGTGTTCCTATTGTAAGAAACATGATGAAACTGAAGTCCCAGATCCTTACTACGGGGGACCGCAAGGTTTTGAGAAG
species | Vitis vinifera |
transcript | Vv06s0061g01530.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGATAGGTGGAGATTTAGAGAAACCCTCCCTGCTGATGCACATAANAAG GTCAAGTTAATGTGTTCCTATTGTAAGAAACATGATGAAACTGAAGTCCCAEST: gi|351046715|gb|FQ453331.1|FQ453331
genomic: TTGATAGGTGGAGATTTAGAGAAACCCTCCCTGCTGATGCACATAAAAAGgttaggaggg ... caccttgcagGTCAAGTTAATGTGTTCCTATTGTAAGAAACATGATGAAACTGAAGTCCCA
EST: TTGATAGGTGGAGATTTAGAGAAANNNNNNNTGCTGATGCACATAAAAAG GTCAAGTTAATGTGTTCCTATTGTAAGAAACATGATGAAACTGAAGTCCCAEST: gi|351048361|gb|FQ449453.1|FQ449453
genomic: TTGATAGGTGGAGATTTAGAGAAACCCTCCCTGCTGATGCACATAAAAAGgttaggaggg ... caccttgcagGTCAAGTTAATGTGTTCCTATTGTAAGAAACATGATGAAACTGAAGTCCCA
EST: TTGATAGGTGGAGATTTAGAGAAACCCTCCCTGCTGATGCACATAAAAAG GTCAAGTTAATGTGTTCCTATTGTAAGAAACATGAEST: gi|33401488|gb|CF207115.1|CF207115
genomic: TTGATAGGTGGAGATTTAGAGAAACCCTCCCTGCTGATGCACATAAAAAGgttaggaggg ... caccttgcagGTCAAGTTAATGTGTTCCTATTGTAAGAAACATGA
EST: TTGATAGGTGGAGATTTAGAGAAACCCTCCCTGCTGATGCACATAAAAAG GTCAAGTTAATGTGTTCCTACTGTAAGAAACATGATGAAACTGAAGTCCCA
genomic: TTGATAGGTGGAGATTTAGAGAAACCCTCCCTGCTGATGCACATAAAAAGgttaggaggg ... caccttgcagGTCAAGTTAATGTGTTCCTATTGTAAGAAACATGATGAAACTGAAGTCCCA
cagctgtaagttgtaacttttgatttttgggctcataggaatattcaccttgcagGTCAAGTTAATGTGTTCCTATTGTAAGAAACATGATGAAACTGAAGTCCCAGATCCTTACTACGGGGGACCGCAAGGTTTTGAGAAG
ttcacctt CT-rich tract
taacttttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaggagggttttctttagtgcagctgtaagttgtaacttttgatttttgggctcataggaatattcaccttgcagGTCAAGTTAATGTGTTCCTATTGTAAGAAACATGATGAAACTGAAGTCCCAGATCCTTACTACGGGGGACCGCAAGGTTTTGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG