1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactgtttcccatcttattgttaacttggtgctttattatgtaaattgccattttcaatgtagtttttttcttcccttttctttctggcgattagGTCTAGGAACAGAGTATTTCAGGATTTTACTCCAGAGCAACTGCGGTGCAAGTGTGCTGGATTTCACTCCACAAGCTGATGGTGGGCCTCCATATATTTG
species | Vitis vinifera |
transcript | Vv06s0061g01340.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTGGTTGCTCACAATGCCGTTAATCAGGCTCTCGTTGCAACGGCAATTG GTCTAGGAACAGAGTATTTCAGGATTTTACTCCAGAGCAACTGCGGTGCAAEST: gi|352786696|gb|FQ479903.1|FQ479903
genomic: TGTGGTTGCTCACAATGCCGTTAATCAGGCTCTCGTTGCAACGGCAATTGgtactgtttc ... tggcgattagGTCTAGGAACAGAGTATTTCAGGATTTTACTCCAGAGCAACTGCGGTGCAA
EST: TGTGGTTGCTCACAATGCCGTTAATCAGGCTCTCGTTGCAACGGCAATTG GTCTAGGAACAGAGTATTTCAGGATTTTACTCCAGAGCAACTGCGGTGCAA
genomic: TGTGGTTGCTCACAATGCCGTTAATCAGGCTCTCGTTGCAACGGCAATTGgtactgtttc ... tggcgattagGTCTAGGAACAGAGTATTTCAGGATTTTACTCCAGAGCAACTGCGGTGCAA
gtaaattgccattttcaatgtagtttttttcttcccttttctttctggcgattagGTCTAGGAACAGAGTATTTCAGGATTTTACTCCAGAGCAACTGCGGTGCAAGTGTGCTGGATTTCACTCCACAAGCTGATGGTGGGCCTCCATATATTTG
ttttcaatgtagtttt CT-rich tract
aatgtagttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtttcccatcttattgttaacttggtgctttattatgtaaattgccattttcaatgtagtttttttcttcccttttctttctggcgattagGTCTAGGAACAGAGTATTTCAGGATTTTACTCCAGAGCAACTGCGGTGCAAGTGTGCTGGATTTCACTCCACAAGCTGATGGTGGGCCTCCATATATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG