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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaactgtttttgaagcgcaatcatttgctatttgttctttgttttctgcttgtgttattgtttgaatgaatcaaatttgtatactgtgatatgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTCCGATTGAGAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTG

Basic information

species Vitis vinifera
transcript Vv06s0061g01120.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 3'ss of exon 3
--aaactgtttttgaagcgcaatcatttgctatttgttctttgttttctgcttgtgttattgtttgaatgaatcaaatttgtatactgtgatatgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTCCGATTGAGAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTG
    |         ||| | || | |   |  |   |   ||  |||         ||     ||   |||   |  | ||||   |   |  |   |  |||| ||    |  ||||| || ||||||||||  |||||||||||||||||||| |||| ||| ||| | ||||| ||||| ||||| |||||  | ||||
atggagaaaggagcaagtgtaaacctgcccattacatgtcttaattttgatcacaattgactcttatctga--tatttgtgtaccttcaaactttgaaacagGAACCTGAATTTTATGTACTGAAAGAAGATGAATCCCCCTGCATTTTTGGTCCAATTGTGAAACAGCGATGGTCTTATGCATGTGCGAAGCAGCTTATTG

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G063949_T01 (Zea mays), 3'ss of exon 3
aaactgtttttga---agcgcaatcatttgctatttgttctttgttttctgcttgtgttattgtttgaatgaatcaaatttgta-tactgtgatatgatat-tagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTCCGATTGAGAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTG
   || |   | |   |  |   | | ||| || ||  | |||||| | |  | ||| ||   | |  ||   | |  |||||  | || | ||||   |   |||| ||    |  ||||| || ||||||||||  || ||||| ||||||||||| || | ||| || || ||||||||||| || ||||||||| | ||||
---ctttccataacttaatgtggtgaattgataatt-ctgtttgttgtattgtggtgatacc-tgtccatttctgatgtttgtgctcctcttatatttcaaacagGAGCCTGAATTTTATGTTCTTAAAGAAGATGAGTCGCCCTGTATTTTTGGTCCAATCGTGAAACAAAGATGGTCCTATGCATGCGCAAAGCAACTTATTG

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G19550.1 (Glycine max), 3'ss of exon 3
aaactgtttttgaagcgcaatcatttgctat-ttgttctttgttttctgcttgtgttattgtttgaatgaatcaaatttgtatact-gtgatatgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTCCGATTGAGAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTG
    | | | |   | ||||   || | |   ||| |  ||||||  | |||||| |    ||    |||      ||  | |  | |  || |  | |||||||||  | |||||||| || |||||||| |  || || |||||||||||| | || ||||||||||||||||| ||||| |||||||| || |||||||
--gttttgtattgggagcaagggttggttgggttggttgttgtttctttcttgtgatgagattgagctgagatgtgttgttttgtttgcaatgttttgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAATCTCCTTGCATTTTTGGTTCTATCGAGAAGCAGAGGTGGTCTTATGCATGTGCAAAACAGTTGATTG

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G30490.2 (Glycine max), 3'ss of exon 3
aaactgtttttgaagcgcaatcatttgctatttgttctttgttttctgcttgtgttattgtttg-aatgaatcaaatt-tgt-atactgt----gatatgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTCCGATTGAGAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTG
      || |  ||     ||| |         ||| |||| ||  ||| | | || || || | ||||||   | || ||| ||  |||     || || | | |||||||  | ||||| || || || || ||||  || || || ||||||||| | ||||| |||||||| ||||||||||||||||| ||||| |||||||
------ttatctaaataggatcttagcaagggagttgtttggttgttgcgtttcttttttttggtaatgaactgagttatgttatgttgttttcaatttggtgt-agGATCCTGCATACTACGTACTTAAGGAGGATGAGTCTCCTTGTATTTTTGGTTCAATTGAAAAGCAGAGATGGTCCTATGCCTGTGCTAAGCAGTTGATTG

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 3
-aaactgtttttgaagcgcaatcatttgctatttgttctttgttttctgcttgtgttattgtttgaatgaatcaaatttgtatactgtgatatgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTCCGATTGAGAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTG
     | | | |   | ||||   || | |  |||||  ||||||  | ||| || |    ||    |||      ||  |    ||  || || | |||||||||  | |||||||| || |||||||| |  || || |||||||||||| | ||||| || ||||||||||| ||||||||||| || || |||||||
ctggttttgtattgggagcaagggttggttggttgtttgttgtttctttcttctgatgggattgagctgatatgtgttgtttgtttgcaatttg-tgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTTCTATTGAAAAACAGAGGTGGTCTTATGCCTGTGCGAAACAGTTGATTG

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G05440.1 (Glycine max), 3'ss of exon 1
aaactgtttttgaagcgcaatcatttgctatttgttctttgttttctgcttgtgttattgtt--tgaa-tgaatcaaatt-tgtatactgtgatatgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTCCGATTGAGAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTG
  ||| || |  ||     ||| |         ||| |||| ||  ||||| | || ||| |  |||  ||| | | ||| |||    |   || |  | | |||||||  | ||||| || || || || ||||  || || || ||||||||| | ||||| |||||||| ||||||||||| ||||| ||||| |||||||
--act-ttatccaaataggatcttagcaagggagttgtttggttgttgcttttttttttggtaatgagctgagttatattatgttgttttcaattttgtgt-agGATCCTGCATACTACGTACTTAAGGAGGATGAATCTCCTTGTATTTTTGGTTCAATTGAAAAGCAGAGATGGTCCTATGCATGTGCTAAGCAGTTGATTG

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G27860.1 (Arabidopsis thaliana), 3'ss of exon 3
--aaactgtttttgaagcgcaatcatttgctatttgttctttgttttctgcttgtgttattgtttgaatgaatcaaatttgtatactgtgatatgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTCCGATTGAGAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTG
  |  || |     |  |  |     |||  ||  |||  |  | |||  ||   |||    |     |  |   |  |||| |  ||||   |  ||  |||||||  ||| |||||| || |||||||||   ||||| ||||| |||||| | |||||||||||||||||||| ||||| |||||||||||| ||||||
ctagtctatcacacacccatagaagcttggaata-gttgatattattcgtctaaggttgggttcactgtttactgatgttgtttgttgtgcctttctac-agGATCCTGCTTTCTATGTTCTTAAAGAAGATATTTCCCCTTGCATATTTGGTTCAATTGAGAAGCAGAGGTGGTCATATGCGTGTGCAAAGCAACTGATTG

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 3'ss of exon 3
aaactgtttttgaagcgcaatcatttgctatttgttctttgttttctgc-ttgtgttattgtttgaatga--atcaaatttgtatactgtgatatgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTCCGATTGAGAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTG
 |  | ||  |      ||     ||  ||||  | ||||  | ||||  || ||||||| ||| | |    | |||   ||       || | |  ||  |||||||    |  ||||| ||||||||||||   ||||| ||||| |||||| | |||||||||||||||||||| ||||| |||||||||||| | ||||
-agatattcgttcgtgtcacgtggttcttattactacttttgtctctgtgttttgttattatttcactactcaccaatgatgctcgtcttgtt-tactac-agGATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGTTCAATTGAGAAGCAGAGGTGGTCATATGCTTGTGCAAAGCAACTTATTG

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ07025 (Selaginella moellendorffii), 3'ss of exon 3
aaactgtttttgaagcgcaatcatttgctatttgttctttgttttctgcttgtgttattgtttgaatgaatcaaatttgtatactgtgatatgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTCCGATTGAGAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTG
                |  |||  |  | | ||  |||| || |    |||    | || ||  |  |  |    ||| ||| ||||    ||     |||| || | |||||| ||||| || || || |  || || ||||||||||| ||||||||||||||| | ||||| ||||| |||||||||||  |||| |
----------------gtgatctctatccagtttctcttcgtct--gactttaccttttcttctatcgtgtt---tttttattctgtt-cgtggcgacagGACCCGAGTTACTACGTCCTTAAGGAGGACGAGTCTCCTTGCATTTTTGGCCCGATTGAGAAGCAGCGATGGTCGTATGCTTGTGCAAAGCAGCTGATCG

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ18978 (Selaginella moellendorffii), 3'ss of exon 3
aaactgtttttgaagcgcaatcatttgctatttgttctttgttttctgcttgtgttattgtttgaatgaatcaaatttgtatactgtgatatgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTCCGATTGAGAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTG
                |  |||  |  | | ||  |||| || |    |||    | || ||  |  |  |    ||| ||| ||||    ||     |||| || | |||||| || || || || || |  || || ||||||||||| ||||||||||||||| | ||||| ||||| |||||||||||  |||| |
----------------gtgatctctatccagtttctcttcgtct--gactttaccttttcttctatcgtgtt---tttttattctgtt-cgtggcgacagGACCCGAGTTACTACGTGCTTAAGGAGGACGAGTCTCCTTGCATTTTTGGCCCGATTGAGAAGCAGCGATGGTCGTATGCTTGTGCAAAGCAGCTGATCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110723599|gb|EE101093.1|EE101093
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCTCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|110720316|gb|EE096132.1|EE096132
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCTCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|294966676|gb|GW839667.1|GW839667
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAACGATTCACCTCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAAATGC-TCCCCCTGCATTTTTGG
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGG
EST: gi|110723284|gb|EE100418.1|EE100418
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|110726996|gb|EE103281.1|EE103281
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|161706361|gb|FC057565.1|FC057565
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|71884664|gb|DT033719.1|DT033719
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|77584429|gb|DV221284.1|DV221284
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|33401793|gb|CF207420.1|CF207420
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|161718332|gb|FC065009.1|FC065009
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|71882410|gb|DT031465.1|DT031465
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|110685692|gb|EE062633.1|EE062633
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|71858870|gb|DT007925.1|DT007925
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCTTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|71872337|gb|DT021392.1|DT021392
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|71860355|gb|DT009410.1|DT009410
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCTCTCTGGCAG                         GATCCCACTTACTTATGTCCTC
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACT-ATGTCCTC
EST: gi|46917845|gb|CN547174.1|CN547174
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|71858968|gb|DT008023.1|DT008023
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTC
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTC
EST: gi|110713549|gb|EE089565.1|EE089565
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|33402259|gb|CF207886.1|CF207886
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|71873327|gb|DT022382.1|DT022382
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|71868252|gb|DT017307.1|DT017307
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|161720930|gb|FC070328.1|FC070328
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|71884313|gb|DT033368.1|DT033368
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|33404942|gb|CF210569.1|CF210569
EST:     ATGGGACAATGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|110420047|gb|EC986308.1|EC986308
EST:     CAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: CAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|71862357|gb|DT011412.1|DT011412
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCTCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGA
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGA
EST: gi|71890357|gb|DT039412.1|DT039412
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|37187419|gb|CF606772.1|CF606772
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|71870729|gb|DT019784.1|DT019784
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|71886436|gb|DT035491.1|DT035491
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAG                         GATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGT
EST: gi|161714110|gb|FC063822.1|FC063822
EST:     ATGGGAAAACGATTGGGAGCTTTCTTCCCAA-GATTCACCCCTCTGGCAG                         GATCC-ACCTACTATGTCCTCAAAGA-GATGCCTCCCC-TGCATTT
genomic: ATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCCCTCTGGCAGgtgagatctc ... atgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcttgtgttattgtttgaatgaatcaaatttgtatactgtgatatgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTCCGATTGAGAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTG
                       aatcaaatttgtata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaactgtttttgaagcgcaatcatttgctatttgttctttgttttctgcttgtgttattgtttgaatgaatcaaatttgtatactgtgatatgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTCCGATTGAGAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - gcaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa