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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaccatggcatatgcatcgcttaaacaaatcaatttggttttgctcactttcttcacacctaactctatctaacagatttagataaccttatcatgctttacaccaaaaccaactatataacacctttattatattgctgcaagtgctgaacaatatttccctcagATTGCATTAGGTGGTCGCTATTCCAGGGACTTCTTCAACAGATATGGGGATTTAAGGCACATCCGTCGGCTGCGATTTTGGCCTCTTAATAAGGTTCTTA

Basic information

species Vitis vinifera
transcript Vv06s0061g01050.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G30440.1 (Glycine max), 3'ss of exon 3
gtaagaccatggcatatgcatcgcttaaacaaatcaatttggttttgctcactttcttcacacctaactctatc-taacagatttagataaccttatcatgctttacaccaaaaccaactatataacacctttattatattgctgcaagtgctgaacaat-atttccctcagATTGCATTAGGTGGTCGCTATTCCAGGGACTTCTTCAACAGATATGGGGATTTAAGGCACATCCGTCGGCTGCGATTTTGGCCTCTTAATAAGGTTCTTA
                                                                 |||  |||  ||   | ||     || ||  |  |  || |   ||    ||| | | ||     | | ||   || |   ||    |||||| |  || |  |||||||||| | |||||  |||||||| | || || |||||||||||||| ||||| ||||||||||||||| |||| || ||||||||||||||||| || |
----------------------------------------------------------------aaacaatatggtagttgtttactgcaatctgtttttaattgat--cattgtcaattcttta-----tctgttccctt-ccaaaaaaattgaacatttgttgctttcagATTGCACTTGGTGGATGCTATTCCCGAGATTTTTTCAACAGATATGGAGATTTGAGGCACATCCGTCGGTTGCGTTTCTGGCCTCTTAATAAGGTGCTGA

upper sequence: Vv06s0061g01050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G05480.1 (Glycine max), 3'ss of exon 3
gtaagaccatggcatatgcatcgcttaaacaaatcaatttggttttgctcactttcttcacacctaactctatctaacagatttagataaccttatcatgctttacaccaaaaccaactatataacacctttattatat--tgctgcaagtgctgaacaat-atttccctcagATTGCATTAGGTGGTCGCTATTCCAGGGACTTCTTCAACAGATATGGGGATTTAAGGCACATCCGTCGGCTGCGATTTTGGCCTCTTAATAAGGTTCTTA
                                                                         | ||||   |   |     |||  |   | |      ||   | |  | | |  |||| | | |    | |  |||    |||||| |  || |  |||||||||| | ||||| ||||||||| | || || || || |||||||| ||||| |||||||| |||||| |||| || ||||||||||||||||| || |
-------------------------------------------------------------------------caaacaatatggtagttgtttactacaatctgtttttaattgatcattgtcaatccttaactgttcccttccacaaaaattgaacatttgttgctttcagATTGCACTTGGTGGACGCTATTCCCGAGATTTTTTTAATAGATATGGCGATTTGAGGCACATTCGTCGGTTGCGTTTCTGGCCTCTTAATAAGGTGCTGA

upper sequence: Vv06s0061g01050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G08900.1 (Glycine max), 3'ss of exon 3
gtaagaccatggcatatgcatcgcttaaacaaatcaatttggttttgctcactttcttcacacctaactctatctaacagatttagataaccttatcatgctttacaccaaaaccaactatataacacctttattatattgctgcaagtgctgaacaa-tatttccctcagATTGCATTAGGTGGTCGCTATTCCAGGGACTTCTTCAACAGATATGGGGATTTAAGGCACATCCGTCGGCTGCGATTTTGGCCTCTTAATAAGGTTCTTA
                                                                     ||   ||    | || | |    ||  ||| || |  |         |   |   |   | |   | |    ||||||    |||| || ||||||  |||||||||| ||||||||||||||||| | || ||  |||| ||| |||| || || ||||||||| |     |||||||||||||  |  ||||||| || |
---------------------------------------------------------------------ctgaatagggtaatttgctgtattt--cattctctgaaaattggttgatgttgatatttcatccgtgttcaactgcaaaatttgaataaatatttcattcagATTGCACTAGGTGGTCGCTATTCCCGAGAATTTCTCAATAGACATGGTGACTTGAGGCACATCAGCAATTTGCGATTTTGGCCAATGGATAAGGTGCTGA

upper sequence: Vv06s0061g01050.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G44850.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagaccatggcatatgcatcgcttaaacaaatcaatttggttttgctc---actttcttcacacctaactctatctaa---cagat-ttagataaccttatcatgctttacaccaaaaccaactatataacacctttattatattgctgca---------agtgctgaacaatatttccctc-------agATTGCATTAGGTGGTCGCTATTCCAGGGACTTCTTCAACAGATATGGGGATTTAAGGCACATCCGTCGGCTGCGATTTTGGCCTCTTAATAAGGTTCTTA
||||  |      | ||   ||| |         | || |    ||||     |  |   |   | | ||  || |||||     ||| |||| |    |  |      | ||  |||| |    |   | | ||    |  ||| |   ||          | || ||| |   ||||   |        ||||||||||||||||||| || ||  | || ||||||||| || | || ||  ||||||||||||| ||| |||| ||||||||  | |  || ||  | |
gtaaagctgataaacata-gtcgttgtgttgtgaccatataagattgcatgatatatctctagtatcgaatcctttctaaagttggatcttagttgttttggttgcatatgactgcaaatcttgatggttgaaactcagaaaatagtagagcctaattttgtattgatgagcttcatttgttttcaaccgtagATTGCATTAGGTGGTCGATACTCACGAGATTTCTTCAACCGACAAGGTGAGCTAAGGCACATCCGGCGGTTGCGGTTTTGGCCCATCAGCAAAGTCTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactatataacacctttattatattgctgcaagtgctgaacaatatttccctcagATTGCATTAGGTGGTCGCTATTCCAGGGACTTCTTCAACAGATATGGGGATTTAAGGCACATCCGTCGGCTGCGATTTTGGCCTCTTAATAAGGTTCTTA
    atataac  putative branch site (score: 3)
                                           tatttccctc  putative PPT
           acctttattatatt  TA-rich tract