1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tattttataggactccctttgattatttcttatttggcactttagctatgatataatggataggttttccaggctgcttactaagaagaatcgctcacagGTTACAGGGAGAAGAGATAGAGCCAAGCCTTTGCCATTTAAGTTGGAGTCTAGTGGCCCTGGGGGATTTGCTGGAGCAAATGATGGGAACCCACGAATCA
species | Vitis vinifera |
transcript | Vv06s0061g00790.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATGGAGAATGTGTCCGATCCTTCCCACATTGATTCTGCACATCACAAG GTTACAGGGAGAAEST: gi|110357244|gb|EC920645.1|EC920645
genomic: TGATGGAGAATGTGTCCGATCCTTCCCACATTGATTTTGCACATCACAAGgtaaatattt ... tcgctcacagGTTACAGGGAGAA
EST: TGATGGAGAATGTGTCCGATCCTTCCCACATTGATTTTGCACATCACAAG GTTACAGGGAGAAGAGATAGAGCCAAGCCTTTGCCATTEST: gi|46917618|gb|CN546947.1|CN546947
genomic: TGATGGAGAATGTGTCCGATCCTTCCCACATTGATTTTGCACATCACAAGgtaaatattt ... tcgctcacagGTTACAGGGAGAAGAGATAGAGCCAAGCCTTTGCCATT
EST: GGAGAATGTGTCCGATCCTTCCCACATTGATTTTGCACATCACAAG GTTACAGGGAGAAGAGATAGAGCCAAGCCTTTGCCATTTAAGTTGGAGTCT
genomic: GGAGAATGTGTCCGATCCTTCCCACATTGATTTTGCACATCACAAGgtaaatattt ... tcgctcacagGTTACAGGGAGAAGAGATAGAGCCAAGCCTTTGCCATTTAAGTTGGAGTCT
ctatgatataatggataggttttccaggctgcttactaagaagaatcgctcacagGTTACAGGGAGAAGAGATAGAGCCAAGCCTTTGCCATTTAAGTTGGAGTCTAGTGGCCCTGGGGGATTTGCTGGAGCAAATGATGGGAACCCACGAATCA
tgcttac putative branch site (score: 2)
atataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttataggactccctttgattatttcttatttggcactttagctatgatataatggataggttttccaggctgcttactaagaagaatcgctcacagGTTACAGGGAGAAGAGATAGAGCCAAGCCTTTGCCATTTAAGTTGGAGTCTAGTGGCCCTGGGGGATTTGCTGGAGCAAATGATGGGAACCCACGAATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - ctccctt
- - - - - - - - - - - - - - - - - - - - - - gctatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaagaa