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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtttatggatgcacttattttttcctcaccataaatgtgtactgtcataaatttccctatttgataaatttgacttgtttcttatattcttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG

Basic information

species Vitis vinifera
transcript Vv06s0061g00770.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00770.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G08670.1 (Glycine max), 3'ss of exon 3
agtttatggatgcacttattttttcctcaccataaatgtgtactgtcataaatttccctatttgataaatttgacttgtttcttatatt--cttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG
  |   |  |    | || | | | || |   ||     ||| | |      |   |   |||  ||    |  | || |   ||  ||  | |  ||| |||||||||||||||| |||||| | |||||||| |||||||||||||| |||||||||||||| || |||||||| |||||||| ||||| ||||||||
--taggtctactttcatactatcttctgaatctattaaagtatttttccttctacacaatttttgtagtcatatcatggtaactaggtttacatttctgtagGTAAAAGAAGAGGCACAACAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG

upper sequence: Vv06s0061g00770.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G19820.1 (Glycine max), 3'ss of exon 3
agtttatggatgcacttattttttcctcaccataaatgtgtactgtcataaatttccctatttgataaatttgacttgtttcttatatt--cttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG
  |   |  |    | || | | | || |   ||     ||| | |      |   |   |||  ||    |  | || |   ||  ||  | |  ||| |||||||||||||||| || ||| | |||||||| |||||||||||||| |||||||||||||| || |||||||| |||||||| ||||| ||||||||
--tacgtctactttcatactatcttctgaatctattaaagtatttttccttctacactatttttgtagtcatatcatggtaactaggtttacatttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351043093|gb|FQ451266.1|FQ451266
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349821779|gb|FQ408217.1|FQ408217
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|26258124|gb|CA809187.1|CA809187
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|351012777|gb|FQ430340.1|FQ430340
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|26258538|gb|CA809601.1|CA809601
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|26257065|gb|CA808128.1|CA808128
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349816214|gb|FQ403710.1|FQ403710
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349809399|gb|FQ411897.1|FQ411897
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349818014|gb|FQ408003.1|FQ408003
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349827458|gb|FQ422326.1|FQ422326
EST:     GGGAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349824659|gb|FQ413326.1|FQ413326
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAGACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349825958|gb|FQ415763.1|FQ415763
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349820988|gb|FQ404241.1|FQ404241
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|32250371|gb|CD716190.1|CD716190
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAATAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|351040587|gb|FQ438131.1|FQ438131
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|351029352|gb|FQ436746.1|FQ436746
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|28958827|gb|CB339413.1|CB339413
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTTTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349817273|gb|FQ405277.1|FQ405277
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAGTGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|34320179|gb|CF372933.1|CF372933
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|351041640|gb|FQ455850.1|FQ455850
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349820586|gb|FQ404081.1|FQ404081
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAATGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349818183|gb|FQ408958.1|FQ408958
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|110710654|gb|EE086980.1|EE086980
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|351015950|gb|FQ431905.1|FQ431905
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|351027101|gb|FQ439962.1|FQ439962
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349807735|gb|FQ402126.1|FQ402126
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349825957|gb|FQ415762.1|FQ415762
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349815335|gb|FQ400490.1|FQ400490
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|351012803|gb|FQ430366.1|FQ430366
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349829711|gb|FQ421229.1|FQ421229
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCC
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|110379944|gb|EC945171.1|EC945171
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349808261|gb|FQ403448.1|FQ403448
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|351019772|gb|FQ439589.1|FQ439589
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|26257781|gb|CA808844.1|CA808844
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|110710470|gb|EE086833.1|EE086833
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|349830872|gb|FQ418132.1|FQ418132
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAATGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|110689228|gb|EE065270.1|EE065270
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|351028155|gb|FQ426056.1|FQ426056
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|351036245|gb|FQ464090.1|FQ464090
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAGACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
EST: gi|22007363|gb|BQ792397.1|BQ792397
EST:     GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGG                         GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT
genomic: GGAAATGCGAATGGAAGAGGAGAGAATTGAGGCAGAGAAAAAACGGgtaatgaagc ... ttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcataaatttccctatttgataaatttgacttgtttcttatattcttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG
                       atttgac  putative branch site (score: 4)
                             cttgtttcttatattc  CT-rich tract
             tatttgataaatttga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtttatggatgcacttattttttcctcaccataaatgtgtactgtcataaatttccctatttgataaatttgacttgtttcttatattcttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - -ggatgca
- - - - - - - - - - - - -ctcacca
- - - - - - - - - - - - - - - - - - - - - ctgtcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacttg