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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttctccttccactttcacttcattgtcatcattcatcatcatcatcatcttgatcctcttctcttctggtacttagcattaatccatcaaatgtcacaaaaatgcagGTTAGAGAATGTGATGAAAGCATGAACTTGCCAAATTTGAAGCTATGGTTAACTGGGGCTCTTCTGAACCAGGGATTTGAGTTCAAAACACTTCCATCCT

Basic information

species Vitis vinifera
transcript Vv06s0061g00720.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00720.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G39650.1 (Glycine max), 3'ss of exon 3
gtaagct-tctccttccactttcacttcattgtcatcattcatcatcatcatca-tcttgatcctcttctcttctggtacttagcattaatccatcaaatgtcacaaaaatgcagGTTAGAGAATGTGATGAAAGCATGAACTTGCCAAATTTGAAGCTATGGTTAACTGGGGCTCTTCTGAACCAGGGATTTGAGTTCAAAACACTTCCATCCT-
||||||| ||  ||  |  || || |||| | |  | ||  |   |    || | |  | ||  | ||  ||| ||| | ||||   || |       ||||    ||||  ||||| | || |  |||  ||   || ||| |||||||||||||||||||| | ||||| |||||||||||||| || ||||| |||    ||  |   |||| 
gtaagctgtcctctctcttttccaattcaatctttttat--actgttgaaatgagttattatgatttttgcttatgg-atttagtcatatt------gatgtattgaaaa--cagGTAAAAGGAACTGAACAAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCTTT-TCCTG

upper sequence: Vv06s0061g00720.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G30240.1 (Glycine max), 3'ss of exon 3
gtaagct-tctccttccactttcacttcattgtcatcattcatcatcatcatca-tcttgatcctcttctcttctggtacttagcattaatccatcaaatgtcacaaaaatgcagGTTAGAGAATGTGATGAAAGCATGAACTTGCCAAATTTGAAGCTATGGTTAACTGGGGCTCTTCTGAACCAGGGATTTGAGTTCAAAACACTTCCATCCT-
||| ||| ||  ||  |  || || |||| | |    ||  ||  |    || | |  | ||  | ||  ||| |||   |   |||||||   |    |||   |||    ||||| | || |  |||   |   || ||| |||||||||||||||||||| | ||||  |||||||||||||| || ||||| |||    ||  |   |||| 
gtaggctgtcctctctcctttccaattcaatctttctat--attgttgaaatgagttattatgatttttgcttatggatttagtcattaatttgtt---tgttgaaaa----cagGTAAAAGGAACTGAACCAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGCTGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCTTT-TCCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcctcttctcttctggtacttagcattaatccatcaaatgtcacaaaaatgcagGTTAGAGAATGTGATGAAAGCATGAACTTGCCAAATTTGAAGCTATGGTTAACTGGGGCTCTTCTGAACCAGGGATTTGAGTTCAAAACACTTCCATCCT
                        cattaat  putative branch site (score: 3)
                                           acaaaaat  TA-rich tract