1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagctatgaatcttggtggccattttgacaaccaaatgtaagtgggttctaaacatgtatactttctgcagGATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGCTACAATAACGTGTACCCTGGGCACGAAGATGAGGCAAAGGACCCACCTC
species | Vitis vinifera |
transcript | Vv06s0061g00300.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCAGTTGCTTTCCATTTTCAACATGAACAACCCCTACGGTGAAGATCAA GATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGCEST: gi|27586880|gb|CB009575.1|CB009575
genomic: GCCAGTTGCTTTCCATTTTCAACATGAACAACCCCTACGGTGAAGATCAAgtaagctatg ... ctttctgcagGATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGC
EST: CCCCTACGGTGAAGATCAA GATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGCEST: gi|110722828|gb|EE099442.1|EE099442
genomic: CCCCTACGGTGAAGATCAAgtaagctatg ... ctttctgcagGATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGC
EST: GCCAGTTGCTTTCCATTTTCAACATGAACAACCCCTACGGTGAAGATCAA GATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGCEST: gi|110381813|gb|EC935451.1|EC935451
genomic: GCCAGTTGCTTTCCATTTTCAACATGAACAACCCCTACGGTGAAGATCAAgtaagctatg ... ctttctgcagGATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGC
EST: GCCAGTTGCTTTCCATTTTCAACATGAACAACCCCTACGGTGAAGATCAA GATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGCEST: gi|110372070|gb|EC936214.1|EC936214
genomic: GCCAGTTGCTTTCCATTTTCAACATGAACAACCCCTACGGTGAAGATCAAgtaagctatg ... ctttctgcagGATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGC
EST: GTTGCTTTCCATTTTCAACATGAACAACCCCTACGGTGAAGATCAA GATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGCEST: gi|30330562|gb|CD013824.1|CD013824
genomic: GTTGCTTTCCATTTTCAACATGAACAACCCCTACGGTGAAGATCAAgtaagctatg ... ctttctgcagGATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGC
EST: CCCCTACGGTGAAGATCAA GATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGCEST: gi|351046931|gb|FQ454541.1|FQ454541
genomic: CCCCTACGGTGAAGATCAAgtaagctatg ... ctttctgcagGATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGC
EST: GCCAGTTGCTTTCCATTTTCAACATGAACAACCCCTACGGTGAAGATCAA GATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATCCAAGC
genomic: GCCAGTTGCTTTCCATTTTCAACATGAACAACCCCTACGGTGAAGATCAAgtaagctatg ... ctttctgcagGATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGC
tggccattttgacaaccaaatgtaagtgggttctaaacatgtatactttctgcagGATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGCTACAATAACGTGTACCCTGGGCACGAAGATGAGGCAAAGGACCCACCTC
ttctaaa putative branch site (score: 2)
tactttct putative PPT
aaatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctatgaatcttggtggccattttgacaaccaaatgtaagtgggttctaaacatgtatactttctgcagGATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGCTACAATAACGTGTACCCTGGGCACGAAGATGAGGCAAAGGACCCACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG