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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcagtagtgcattcaatttctttatgagttaacactcgaatggccttgttggttggtttatgatgttttgaatggtttgctgcagTGCGGTGTTGGCACACTTTATCTTGAAGGAGAGGTTGCACAAACTAGGGATTTTGGGCTGTGTTATGTGCATTTCTGGTTCTGTCATAATTGTTATCCAT

Basic information

species Vitis vinifera
transcript Vv06s0009g03650.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718932|gb|FC067009.1|FC067009
EST:     GCCCCAGCTGTTCTTGTTACCCCTCTTGGGGCATTAAGTATCATTGTCAG                         TGCGGTGTTGGCACACTTTATCTTGAAGGAGAGGTTGCACAAACTAGGGAT
genomic: GCCCCAGCTGTTCTTGTTACCCCTCTTGGGGCATTAAGTATCATTGTCAGgtaatcagta ... tttgctgcagTGCGGTGTTGGCACACTTTATCTTGAAGGAGAGGTTGCACAAACTAGGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacactcgaatggccttgttggttggtttatgatgttttgaatggtttgctgcagTGCGGTGTTGGCACACTTTATCTTGAAGGAGAGGTTGCACAAACTAGGGATTTTGGGCTGTGTTATGTGCATTTCTGGTTCTGTCATAATTGTTATCCAT
 agttaac  putative branch site (score: 3)
                          tttatgat  TA-rich tract