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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggacttactatacttgtcaacatcacacacaattgtattgcactatcaacacggtattttgcacatgggttcatgtttaacgttatctgctggagttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAG

Basic information

species Vitis vinifera
transcript Vv06s0009g00410.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g00410.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G10030.1 (Glycine max), 3'ss of exon 4
gtaaggacttactatacttgtcaacatcacacacaattgtattgcactatcaacacggtattttgcacatgggttcatgtttaacgttatctgctggagttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAG
   |   | || || |  |      |    |   ||   |     | | |    |   | |||||    |||  |||  || |    | |||  | | |   ||||||||||||||||| ||||| ||    |||||||| |||||||| ||||||||||| ||||||
---aaatcctaataaatcttaggtaacagaaagaaaacattacaaagtgtgtttatatttttttgtttttgg-ctcaacttgag---tttctaattgtggcctgcagCTATCCTAAGGACTCCGATAAGGTTATGCTTGCAAAACAAACTGGGCTTACTCGGAGCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32269618|gb|CD718777.1|CD718777
EST:     AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCC                         CTATCCTAAGGATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTAC
genomic: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggactt ... agttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTAC
EST: gi|32269940|gb|CD719099.1|CD719099
EST:     AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCC                         CTATCCTAAGGATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTAC
genomic: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggactt ... agttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTAC
EST: gi|110693884|gb|EE070506.1|EE070506
EST:     AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCC                         CTATCCTAAGGATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTAC
genomic: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggactt ... agttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTAC
EST: gi|32269627|gb|CD718786.1|CD718786
EST:     AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCC                         CTATCCTAAGGATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTAC
genomic: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggactt ... agttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTAC
EST: gi|71871047|gb|DT020102.1|DT020102
EST:     AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCC                         CTATCCTAAGGATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTAC
genomic: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggactt ... agttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTAC
EST: gi|32268362|gb|CD717521.1|CD717521
EST:     AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCC                         CTATCCTAAGGATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTAC
genomic: AGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCgtaaggactt ... agttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacggtattttgcacatgggttcatgtttaacgttatctgctggagttttgcagCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAG
                          gtttaac  putative branch site (score: 3)
                        atgtttaa  TA-rich tract