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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatatataaaaaaattacatagtatggcattgcatattttaaaatcatatctcgggttttaatatacggatcaacctgcagGAGCACATACAATAGGCCAAGCGAGATGCACCTCCTTCAGGGCCAGGATATACAACGAAACCAACATCGATAGCTCCTTCGCTAAGACAAGGCAAGCGAG

Basic information

species Vitis vinifera
transcript Vv06s0004g07770.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352787091|gb|FQ476124.1|FQ476124
EST:     TAAGTTCCAAGCTCAGGGCCTCTCAACCCGGGACATGGTGGCTTTATCTG                         GAGCACATACAATAGGCCAAGCGAGATGCACCTCCTTCAGGGCCAGGATAT
genomic: TAAGTTCCAAGCTCAGGGCCTCTCAACCCGGGACATGGTGGCTTTATCTGgtagatatat ... caacctgcagGAGCACATACAATAGGCCAAGCGAGATGCACCTCCTTCAGGGCCAGGATAT
EST: gi|352787014|gb|FQ476047.1|FQ476047
EST:     TTAGTTCCAAGCTCAGGGCCTCTCCACCCGGGACATGGTGGCTTTATCTG                         GAGCACATACAATAGGCCAAGCGAGATGCACCTCCCTCGGGGCCAGGAT
genomic: TAAGTTCCAAGCTCAGGGCCTCTCAACCCGGGACATGGTGGCTTTATCTGgtagatatat ... caacctgcagGAGCACATACAATAGGCCAAGCGAGATGCACCTCCTTCAGGGCCAGGAT
EST: gi|352787251|gb|FQ477871.1|FQ477871
EST:     TAAGTTCCAAGCTCAGGGCCTCTCAACCCGGGACATGGTGGCTTTATCTG                         GAGCACATACAATAGGCCAAGCGAGATGCACCTCCTTCAGGGCCCGGATAT
genomic: TAAGTTCCAAGCTCAGGGCCTCTCAACCCGGGACATGGTGGCTTTATCTGgtagatatat ... caacctgcagGAGCACATACAATAGGCCAAGCGAGATGCACCTCCTTCAGGGCCAGGATAT
EST: gi|110419121|gb|EC985323.1|EC985323
EST:     TAAGTTCCAAGCTCAGGGCCTCTCAACCCGGGACATGGTGGCTTTATCTG                         GAGCACATACAATAGGCCAAGCGAGATGCACCTCCTTCAGGGCCAGGATAT
genomic: TAAGTTCCAAGCTCAGGGCCTCTCAACCCGGGACATGGTGGCTTTATCTGgtagatatat ... caacctgcagGAGCACATACAATAGGCCAAGCGAGATGCACCTCCTTCAGGGCCAGGATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattgcatattttaaaatcatatctcgggttttaatatacggatcaacctgcagGAGCACATACAATAGGCCAAGCGAGATGCACCTCCTTCAGGGCCAGGATATACAACGAAACCAACATCGATAGCTCCTTCGCTAAGACAAGGCAAGCGAG
                              ttttaat  putative branch site (score: 3)
       atattttaaaatcata  TA-rich tract