Sequence
atgc intronic sequence ATGC exonic sequencegttttggagtttctttcgccattgtcagagcagcttgatgtttttctttttatgtttcttttacttcttcatgttacttgctggttggagACTAAATTGAGGAGCTTCTCTTGTTTAACTACTGGTGACACCATAGTGATTGATTATAGCAATAAGAAGTTTTACATTGATATAGTAGACACCAAACCCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g05010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G04140.1 (Glycine max), 3'ss of exon 7
gttttggagtttctttcgccattgtcaga-gcagcttgatgtttttctttttatgtttcttttacttcttcatgttacttgctggttggagACTAAATTGAGGAGCTTCTCTTGTTTAACTACTGGTGACACCATAGTGATTGATTATAGCAATAAGAAGTTTTACATTGATATAGTAGACACCAAACCCT
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--gttagtatttcttttctaatatctagttatacctttaacagtgtcaattgatattttctttcattctcttgattatttgcagCTTAGAGACTACACTTAGGAGCTACTCATGTTTAACAACTGGTGACACAATAATGGTTCCTTATAACAACAAGAAGTATTACATTGACATAGTTGAAACT-------
upper sequence: Vv06s0004g05010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G14660.1 (Glycine max), 3'ss of exon 7
-------------------------gttttggagtttctttcgccattgtcagagcagct--tgatgtttttctttttatgtttcttttacttcttcatgttacttg--ctggttggagACTAAATTGAGGAGCTTCTCTTGTTTAACTACTGGTGACACCATAGTGATTGATTATAGCAATAAGAAGTTTTACATTGATATAGTAGACACCAAACCCT
| || || | || ||| | | | | || | | |||| | || ||| ||| || | ||| | | || |||| | | ||||||||| |||||||||||| || |||||||| ||| ||||| ||| | ||| ||||| | ||||||||| ||||| || ||
gtatgaatgtgccacatatagttgcttctttgacaaaatctcataattattcatttatttgttaattaatgtattttactaatttctttctttcccttggtcatttgtgcagCTTAGAGATTTCACTGAGGAGCTACTCTTGTTTAACAACCGGTGACACTATAATGATTCCTTACAACAACAAGAAATATTACATTGACATAGTGGAAACT-------
upper sequence: Vv06s0004g05010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G06620.1 (Glycine max), 3'ss of exon 6
-----------------gttttggagtttctttcgccat-tgtcagagcagcttgatg-tttttctttttatgtttcttttacttcttcatgttactt--gctggttggagACTAAATTGAGGAGCTTCTCTTGTTTAACTACTGGTGACACCATAGTGATTGATTATAGCAATAAGAAGTTTTACATTGATATAGTAGACACCAAACCCT
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gtatgtaaatgtgccacatgtagttgcttctttgacaaaatctcataattatttgttaattaatattttcctaatttctttctttcccttggtcatttgtgcagCTTAGAGATTTCACTGAGGAGCTACTCTTGTTTAACAACCGGTGACACTATAATGATTCCTTACAACAACAAGAAATATTACATTGACATAGTGGAAACT------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatgtttttctttttatgtttcttttacttcttcatgttacttgctggttggagACTAAATTGAGGAGCTTCTCTTGTTTAACTACTGGTGACACCATAGTGATTGATTATAGCAATAAGAAGTTTTACATTGATATAGTAGACACCAAACCCT
gcttgat putative branch site (score: 5)
tttttctttttatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttggagtttctttcgccattgtcagagcagcttgatgtttttctttttatgtttcttttacttcttcatgttacttgctggttggagACTAAATTGAGGAGCTTCTCTTGTTTAACTACTGGTGACACCATAGTGATTGATTATAGCAATAAGAAGTTTTACATTGATATAGTAGACACCAAACCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT