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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttatcgccatatctcggttatttgtcgttgggaatctttcttgttatgtatggagtgagtaatgaattttttctttggtatcttcttattcagCTTGCATGGATTCTGGTATACAGCTTGGTGCACTTCTGATTGGCTGGTGGCACCAACTTGGTTTCCATTAGTGATGGTTGAATGACGTGGGGCTTAGTGT

Basic information

species Vitis vinifera
transcript Vv06s0004g04920.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110365966|gb|EC929552.1|EC929552
EST:     ATGGGGCCCTCCTCCAAGAGGGGCTTTTTGCTTCTATAACGCTCTTCCTG                         CTTGCATGGATTCTGGTATACAGCTTGGTGCACTTCTGATTGGCTGGTGGC
genomic: ATGGGGCCCTCCTCCAAGAGGGGCTTTTTGCTTCTATAACGCTCTTCCTGgtacttatcg ... tcttattcagCTTGCATGGATTCTGGTATACAGCTTGGTGCACTTCTGATTGGCTGGTGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgttatgtatggagtgagtaatgaattttttctttggtatcttcttattcagCTTGCATGGATTCTGGTATACAGCTTGGTGCACTTCTGATTGGCTGGTGGCACCAACTTGGTTTCCATTAGTGATGGTTGAATGACGTGGGGCTTAGTGT
                            ttttttctttggtatc  CT-rich tract
                     taatgaattttttctt  TA-rich tract