1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tacaagattaaatcttatagaggactctgtccatagaatgaattttgttctaaaatatgaccatctctgacttgactaatgaaaattaccattaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
species | Vitis vinifera |
transcript | Vv06s0004g04700.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|34320123|gb|CF372877.1|CF372877
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|87586971|gb|DY475025.1|DY475025
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|110424097|gb|EC990451.1|EC990451
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|110713192|gb|EE088900.1|EE088900
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|34545250|gb|CF513482.1|CF513482
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|110686881|gb|EE063803.1|EE063803
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|32458600|gb|CD799774.1|CD799774
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|110365199|gb|EC927802.1|EC927802
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|110380640|gb|EC945923.1|EC945923
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|110717262|gb|EE092966.1|EE092966
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|34320345|gb|CF373099.1|CF373099
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|110384561|gb|EC949005.1|EC949005
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|110702521|gb|EE081333.1|EE081333
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|110711893|gb|EE088894.1|EE088894
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|110381069|gb|EC946383.1|EC946383
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|34544205|gb|CF512437.1|CF512437
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|34545330|gb|CF513562.1|CF513562
genomic: GTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|110385580|gb|EC950119.1|EC950119
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|110378520|gb|EC943657.1|EC943657
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGGEST: gi|34545089|gb|CF513321.1|CF513321
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
EST: GGAGTATTTCACGTCACACTGTTGAACACTCG TTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
genomic: GGAGTATTTCACGTCACACTGTTGAACACTCGgtaagatcta ... attaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
tgttctaaaatatgaccatctctgacttgactaatgaaaattaccattaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
gactaat putative branch site (score: 2)
actaatgaaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaagattaaatcttatagaggactctgtccatagaatgaattttgttctaaaatatgaccatctctgacttgactaatgaaaattaccattaccgcagTTGAAGAAGATGTGCAAAGAAGCTGCATATTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - ctgtcca
- - - - - - - - - - - - - - - - - agaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - -aaaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatta