Sequence
atgc intronic sequence ATGC exonic sequencegtatgatccaatttccacaagaaactgtttcttaataattaattaactagggaatttgatgaaaccggctttggcgaactgcagGTATGGACTTCCATGAGCTGCTTGAAATACCACAAGGGGATAGACGACGGTACCATGATGATGTTTCGATTATTGTTATTTCATTGGAGGGCATGATATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g04600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G06790.1 (Glycine max), 3'ss of exon 5
-----------gtatgatccaatttccacaagaaactgtttcttaataat-taattaactagggaatttgatgaaacc--ggctttggcgaactgcagGTATGGACTTCCATGAGCTGCTTGAAATACCACAAGGGGATAGACGACGGTACCATGATGATGTTTCGATTATTGTTATTTCATTGGAGGGCATGATATG
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gtactgatgaaattacaaccaacaatttcattcaaagatctcacaatcgcataatgggtccttggttttactgatatttttgccttgttaatcttcagGTTTGGACTTTCACGAGTTGCTCGAAATTCCACAGGGTGATCGGCGACGTTACCATGATGATGTTTCCATCATTGTTATTTCTTTGGAGGGAAGGATATG
upper sequence: Vv06s0004g04600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G14840.1 (Glycine max), 3'ss of exon 5
----------gtatgatcca-atttcca--caagaaact-----gtttcttaataattaattaactagggaatttgatgaaaccg--gctttggcgaactgcagGTATGGACTTCCATGAGCTGCTTGAAATACCACAAGGGGATAGACGACGGTACCATGATGATGTTTCGATTATTGTTATTTCATTGGAGGGCATGATATG
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gtactgataattacaaccaacattttcattcaaaagatctcacaatcgcataatggatcattggttttactttttactgatgtttttgccatgttaatcttcagGTTTGGACTTTCACGAGTTGCTCGAAATTCCACAGGGTGATAGGCGCCGTTACCATGATGATGTTTCCATCATTGTTATTTCTTTGGAGGGAAGGATATG
upper sequence: Vv06s0004g04600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G28890.1 (Arabidopsis thaliana), 3'ss of exon 3
-----gtatgatccaatttccacaagaaactgtttcttaataattaattaactagggaatttgatgaaaccggctttggcgaactgcagGTATGGACTTCCATGAGCTGCTTGAAATACCACAAGGGGATAGACGACGGTACCATGATGATGTTTCGATTATTGTTATTTCATTGGAGGGCATGATATG
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gtaataatctatcgaaaaccgaaaagagaaatctttgattcgaagtattggatcaagtgttaactcttttttcttattgatgtttctagGTATGGATTTCCATGAACTGCTTGAGATACCACAAGGGGAACGGAGACGGTACCACGATGATGTTTCCATTGTAGTGATCTCTTTAGAAGGAAGAATGTG
upper sequence: Vv06s0004g04600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G07630.1 (Arabidopsis thaliana), 3'ss of exon 3
-------gtatgatccaatttccacaagaaactgtttcttaataattaattaactagggaatttgatgaaaccggctttggcgaactgcagGTATGGACTTCCATGAGCTGCTTGAAATACCACAAGGGGATAGACGACGGTACCATGATGATGTTTCGATTATTGTTATTTCATTGGAGGGCATGATATG
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gtatggtgaacattcatacattcgaaaaaaacgatttc--agtaaatatttg-ttatctgaattgatg----ttttatttgtgtattgtagGTATGGATTTCCATGAATTGCTAGAGATACCACAAGGTGAACGAAGACGGTATCACGATGATGTTTCAATAGTAGTGATCTCTTTAGAAGGAAGAATGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttaataattaattaactagggaatttgatgaaaccggctttggcgaactgcagGTATGGACTTCCATGAGCTGCTTGAAATACCACAAGGGGATAGACGACGGTACCATGATGATGTTTCGATTATTGTTATTTCATTGGAGGGCATGATATG
ataattaattaacta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgatccaatttccacaagaaactgtttcttaataattaattaactagggaatttgatgaaaccggctttggcgaactgcagGTATGGACTTCCATGAGCTGCTTGAAATACCACAAGGGGATAGACGACGGTACCATGATGATGTTTCGATTATTGTTATTTCATTGGAGGGCATGATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG