Sequence
atgc intronic sequence ATGC exonic sequence...aagaataatgttttgatcttaatcttttcacatcactagttcacaaaaaggaatgtttttgtgcaaagtctctatggtgccatctggtaattcattgcagGTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATCTATGAGGGATATGCTCTTCCACATGCTATCCTACGTCTTGACCTGGCTGGTCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G04360.1 (Glycine max), 3'ss of exon 2
aagaataatgttttgatcttaatcttttcacatca-ctagttcacaaaaaggaatgtttttgtgcaaagtctctatggtgccatctggtaattcattgcagGTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATCTATGAGGGATATGCTCTTCCACATGCTATCCTACGTCTTGACCTGGCTGGTCG
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-tttatatctttttaatctgacttgaagtaattgagctagcctggttgaggttgtctagcttggctggttgcccttatgcttgttacattaatttatgtagGTATTGTTCTGGACTCTGGAGATGGTGTCAGCCACACTGTTCCCATTTATGAAGGGTATGCCCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGGCG
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G41060.1 (Glycine max), 3'ss of exon 2
---------------------------------------------------------------------------aagaataatgttttgatcttaatcttttcacatcact---agttcacaaaaaggaatgtttttgtgcaa--agtctctatggtgcc--atctggtaattcattgcagGTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATCTATGAGGGATATGCTCTTCCACATGCTATCCTACGTCTTGACCTGGCTGGTCG
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gttagtctttcttgtgctggctaataataaaaccagcaatgctatgcaaggtttaatttgccaatgggaatgaatatggaccagatactgaatgtgaaaactctacttctttttaatctcacttgaagtaattgtctggcttggctggttgcccttatgcttgttccattaatttgt-gtagGTATTGTTCTGGACTCTGGAGATGGTGTCAGCCACACTGTGCCCATTTATGAAGGGTATGCCCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGGCG
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G06820.1 (Glycine max), 3'ss of exon 3
aagaataatgttttgatcttaatcttt-tcacatcactagttcacaaaaaggaatgtttttgtgcaaagtctctatggtgccatctgg--taattcattgcagGTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATCTATGAGGGATATGCTCTTCCACATGCTATCCTACGTCTTGACCTGGCTGGTCG
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-tctatatcttcctaatctaactagaagtagtagagctgatttctctgaggttgtctaact-tgtcttgtttccttcatgcttgttgaattaatttgt-gcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACGAGGGGTATGCTCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGACG
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G14880.1 (Glycine max), 3'ss of exon 2
aagaataatgttttgatcttaatcttttcacatcactagt-tcacaaaaaggaatgtttttg--tgcaaagtctctatggtgccatctgg--taattcattgcagGTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATCTATGAGGGATATGCTCTTCCACATGCTATCCTACGTCTTGACCTGGCTGGTCG
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----cttaagttgtggttgaaaactctatatcttcctaatctaactagaagttttagaactgatttctctgtttctttcatgcttgttgaattaatttgt-acagGTATCGTTCTAGACTCTGGAGATGGTGTGAGCCATACCGTCCCCATTTACGAGGGCTACGCTCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110387986|gb|EC952697.1|EC952697EST: TGTTGCCATCCAGGCTGTTCTTTCCCTCTATGCCAGTGGACGTACAACTG GTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATCTATG
genomic: TGTTGCCATCCAGGCTGTTCTTTCCCTCTATGCCAGTGGACGTACAACTGgtatgcagtc ... ttcattgcagGTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATCTATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaaggaatgtttttgtgcaaagtctctatggtgccatctggtaattcattgcagGTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATCTATGAGGGATATGCTCTTCCACATGCTATCCTACGTCTTGACCTGGCTGGTCG
aatgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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aagaataatgttttgatcttaatcttttcacatcactagttcacaaaaaggaatgtttttgtgcaaagtctctatggtgccatctggtaattcattgcagGTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATCTATGAGGGATATGCTCTTCCACATGCTATCCTACGTCTTGACCTGGCTGGTCG
aagaata
- - - - - - - - - - - - - - - catcact
- - - - - - - - - - - - - - - - - - - - - acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccatct