Sequence
atgc intronic sequence ATGC exonic sequence...atctgtaatcaatcaaaggcttttagcagatgactctttttcttttcactctggtgttccaatgatgttgaataggatgcttttgcattttcttttgcagTTATTTGAGGTTCAACTTGAGAATTCTGAAGTGCTCTTCCGTTATTCATCTGCTCTTGTTCAAGGTGCTACAAATGTGTTCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g04350.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM5G871336_T01 (Zea mays), 3'ss of exon 3
atctgtaatcaatcaaaggcttttagcagatgactctttttcttttcactct-ggtgttccaatgatgttgaataggatgctt-ttgca-ttttcttttgcagTTATTTGAGGTTCAACTTGAGAATTCTGAAGTGCTCTTCCGTTATTCATCTGCTCTTGTTCAAGGTGCTACAAATGTGTTCTG
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--taaaatttagtttgattattccttcacaagaca-tgattctcccaattatagatacatccatatttaaacttagtttactgattacagttttgttatgcagTTGTTTGAAGCCCCTCTTGATGAAAAAGAAATATCGCTACGATATAGCTCTGCTCTTGTTCAAGGTGCTACAAATGTATTTTG
upper sequence: Vv06s0004g04350.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G07000.1 (Glycine max), 3'ss of exon 3
atctgtaatcaatcaaaggcttttagcagatgactctttt------tcttttcactctggtgttccaatgatgttgaataggatgcttttgcattttcttttgcagTTATTTGAGGTTCAACTTGAGAATTCTGAAGTGCTCTTCCGTTATTCATCTGCTCTTGTTCAAGGTGCTACAAATGTGTTCTG
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atcttccatggatcctag--ttgtagtatatagtttgccaataaaacattttccatatacgcttcctgctgtgttgcaca--atgacttcataactt--tttgcagTTATTTGAAGTTCATCTTGATAATCCAGAAGTGCTTCTCCGGTATTCATCTGCTCTGGTTCAAGGTGCCACAAATGTTTTCTG
upper sequence: Vv06s0004g04350.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G15030.1 (Glycine max), 3'ss of exon 3
-atctgtaatcaatcaaaggcttttagcagatgactctttt------tcttttcactctggtgttccaatgatgttgaataggatgcttttgcattttcttttgcagTTATTTGAGGTTCAACTTGAGAATTCTGAAGTGCTCTTCCGTTATTCATCTGCTCTTGTTCAAGGTGCTACAAATGTGTTCTG
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tatcttccatggatcgtaa--ttgtggtatatagtttgtcagtaaaacattttccatgtagcttcctactg-tgtttcaca--ataacttcataactt--tttgcagTTATTTGAAGTTCATCTTGATAATCCAGAAGTGCTTCTCCGGTATTCATCTGCTCTGGTTCAAGGTGCCACAAATGTTTTCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcactctggtgttccaatgatgttgaataggatgcttttgcattttcttttgcagTTATTTGAGGTTCAACTTGAGAATTCTGAAGTGCTCTTCCGTTATTCATCTGCTCTTGTTCAAGGTGCTACAAATGTGTTCTG
cttttgcattttcttt CT-rich tract
attttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atctgtaatcaatcaaaggcttttagcagatgactctttttcttttcactctggtgttccaatgatgttgaataggatgcttttgcattttcttttgcagTTATTTGAGGTTCAACTTGAGAATTCTGAAGTGCTCTTCCGTTATTCATCTGCTCTTGTTCAAGGTGCTACAAATGTGTTCTG
- - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggatgct