1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttagattggataaacttaattatgaatatcctgagcaagaatgttcttttgctgggaaatattttcgacaactcttctgacattaatttttgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGCCTTGGATGTGGCCAACAAAATTGGGATCATCTAAGGTAGGATCTGTCTA
species | Vitis vinifera |
transcript | Vv06s0004g04090.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAG GCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGCEST: gi|30302847|gb|CB979641.1|CB979641
genomic: GTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAGgtatcaatat ... tgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGC
EST: GTTAAAAAGATGTATGATATTCACACCAATAAAGTGAATACCCTGATCAG GCCTGATGGTACCTAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGCEST: gi|110723721|gb|EE101359.1|EE101359
genomic: GTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAGgtatcaatat ... tgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGC
EST: GTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAG GCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGCEST: gi|110383279|gb|EC947641.1|EC947641
genomic: GTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAGgtatcaatat ... tgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGC
EST: GTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAG GCCTGATGGTACCAAGAAGGCATATGTTAGGTTGACCCCAGACTATGATGCEST: gi|110689147|gb|EE065119.1|EE065119
genomic: GTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAGgtatcaatat ... tgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGC
EST: GTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAG GCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGCEST: gi|110708203|gb|EE085476.1|EE085476
genomic: GTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAGgtatcaatat ... tgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGC
EST: GTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAG GCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGCEST: gi|110377848|gb|EC942944.1|EC942944
genomic: GTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAGgtatcaatat ... tgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGC
EST: GTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAG GCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGC
genomic: GTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAGgtatcaatat ... tgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGC
cttttgctgggaaatattttcgacaactcttctgacattaatttttgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGCCTTGGATGTGGCCAACAAAATTGGGATCATCTAAGGTAGGATCTGTCTA
tttttgt CT-rich tract
attaatttttgtgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagattggataaacttaattatgaatatcctgagcaagaatgttcttttgctgggaaatattttcgacaactcttctgacattaatttttgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGCCTTGGATGTGGCCAACAAAATTGGGATCATCTAAGGTAGGATCTGTCTA
- - - -ggataaa
- - - - - - - - - - - - - - - - - gcaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacat