Sequence
atgc intronic sequence ATGC exonic sequencegtcagtggatctttctggagttttacttactattttacacaaagcttaattaattaaaaggcttctttttgtagGAAGTATTCAAGGCTTACACAATATTCATGGGAGCTTTAACGTTCCCAACATGCCTGGAACACTTGCATCAAGAAACTCAACAATAAACAGCGTTCCTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03940.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G07970.1 (Glycine max), 3'ss of exon 3
gtcagtggatctttctggagttttacttactat-tttacacaaagcttaattaattaaaaggcttctttttgtagGAAGTATTCAAGGCTTACACAATATTCATGGGAGCTTTAACGTTCCCAACATGCCTGGAACACTTGCATCAAGAAACTCAACAATAAACAGCGTTCCTTC
|| | | | || ||||| || | || ||| || || | || |||| ||| || || || |||| ||||||||| || ||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||| ||||| | || || ||
gtggggagcttttactggatttactttggaaatcttttcatgtagttgtat-aattgttagg-ttattgctgcagGAGCTATTCAAGGATTGCACAATATTCATGGGAGCTTTAATGTTCCCAACATGCCCGGTACACTCACATCAAGAAACTCAACTATAAATAATGTACCATC
upper sequence: Vv06s0004g03940.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G15480.1 (Glycine max), 3'ss of exon 3
gtcagtggatctttctggagttt-tacttactat-tttacacaaagcttaattaattaaaaggcttctttttgtagGAAGTATTCAAGGCTTACACAATATTCATGGGAGCTTTAACGTTCCCAACATGCCTGGAACACTTGCATCAAGAAACTCAACAATAAACAGCGTTCCTTC
|| | | | || ||||| ||| | | | || | | || || || ||||| ||| ||||| || |||| | |||||||| || ||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||| ||||| | || || ||
gtggggagcttttactggattttcttcatttcatatgtccatgtag-ttgtgtaattgctagg-ttcttgctgcagGAGGCATTCAAGGATTGCACAATATTCATGGGAGCTTTAATGTTCCCAACATGCCCGGTACACTCACATCAAGAAACTCAACTATAAATAATGTACCATC
upper sequence: Vv06s0004g03940.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G15480.2 (Glycine max), 3'ss of exon 3
---------------------------------------gtcagtggatctttctggagttt-tacttactattt-tacacaaagcttaattaattaaaaggcttctttttgtagGAAGTATTCAAGGCTTACACAATATTCATGGGAGCTTTAACGTTCCCAACATGCCTGGAACACTTGCATCAAGAAACTCAACAATAAACAGCGTTCCTTC
|| | | | || ||||| ||| | | | || | | || || || ||||| ||| ||||| || |||| | |||||||| || ||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||| ||||| | || || ||
gtcagtctggtgcagcctccccaatttttcatcacactggtggggagcttttactggattttcttcatttcatatgtccatgtag-ttgtgtaattgctagg-ttcttgctgcagGAGGCATTCAAGGATTGCACAATATTCATGGGAGCTTTAATGTTCCCAACATGCCCGGTACACTCACATCAAGAAACTCAACTATAAATAATGTACCATC
upper sequence: Vv06s0004g03940.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G40650.1 (Glycine max), 3'ss of exon 2
gtcagtggatctttctggagttt-tacttactattttacacaaagcttaattaattaaaaggcttctttttgtagGAAGTATTCAAGGCTTACACAATATTCATGGGAGCTTTAACGTTCCCAACATGCCTGGAACACTTGCATCAAGAAACTCAACAATAAACAGCGTTCCTTC
|| | | || || |||| | ||| | | | | ||| ||||| ||| ||||| || ||| |||||| || || ||||| ||||||||||||||||| || ||||| ||||| | |||||| | |||||||||||||||||||| ||||||| |
gtggggaaactttgctagagtcaatcctttttctcctctcctttagttatataatttccagg-ttcttgctgcagGTTCTATTCAGGGATTGCACAACATTCATGGGAGCTTTAATGTACCCAATATGCCCAGTACACTTACGTCAAGAAACTCAACAATAAATAGCGTTCGAAC
upper sequence: Vv06s0004g03940.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G04780.1 (Glycine max), 3'ss of exon 3
gtcagtggatctttctggagttttacttactattttacacaaagcttaattaattaaaaggcttctttttgtagGAAGTATTCAAGGCTTACACAATATTCATGGGAGCTTTAACGTTCCCAACATGCCTGGAACACTTGCATCAAGAAACTCAACAATAAACAGCGTTCCTTC
|| | || || || |||| | | | | | | ||| | ||| ||| ||||| || ||| |||||| || || ||||| |||||||||| |||||| || ||||| ||||| | ||||| |||||||||||||||||||||| || ||||| |
gtggggatattttgctagagtcaatcctttttctcctccccttagttatatcattgtcagg-ttcttgctgcagGTTCTATTCAGGGATTGCACAACATTCATGGGAACTTTAATGTACCCAATATGCCCAGTACACTCACATCAAGAAACTCAACAATAAATAGTGTTCCAAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttttacttactattttacacaaagcttaattaattaaaaggcttctttttgtagGAAGTATTCAAGGCTTACACAATATTCATGGGAGCTTTAACGTTCCCAACATGCCTGGAACACTTGCATCAAGAAACTCAACAATAAACAGCGTTCCTTC
cttctttttgt CT-rich tract
tattttacacaaagct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagtggatctttctggagttttacttactattttacacaaagcttaattaattaaaaggcttctttttgtagGAAGTATTCAAGGCTTACACAATATTCATGGGAGCTTTAACGTTCCCAACATGCCTGGAACACTTGCATCAAGAAACTCAACAATAAACAGCGTTCCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA