Sequence
atgc intronic sequence ATGC exonic sequence...ttttattcttattgaggtttaggtattggatggtgactatctcacagactcacagtagggtgatttatatttgatttttgtttgtatggtgatttggcagAATGCAAGTAGAGGTGAGCAAGCATACAGAGGGGTCCAAAGAAAAGATGACTCGCCCCAATGGGCTGCCAGAATCATTGATTCGTTATGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03700.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G04850.1 (Glycine max), 3'ss of exon 2
ttttattcttattgaggtttaggtattggatggtgactatctcacagactcacagtagggtgatt-tatatttgatttttgtttgt-atggtgatt-tggcagAATGCAAGTAGAGGTGAGCAAGCATACAGAGGGGTCCAAAGAAAAGATGACTCGCCCCAATGGGCTGCCAGAATCATTGATTCGTTATGATG
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---ggatgtggctaaagatcggagcctttgcattgattgtatgtggaatatatagcgggattcttacccaacgtgtttttctttgtcatggtgattgtggcagAATGCAAGTGGAGGTTAGCAAGCATACGGAGGGGTCCAAGGAGAAGATGCTACGTCCCAATGGATTGCCCGAATCCTTGATTCGATATGATG
upper sequence: Vv06s0004g03700.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G07890.2 (Glycine max), 3'ss of exon 4
ttttattcttattgaggtttaggtattggatggtgactatctcaca--gactcacagtagggtgatttatatttgatttttgtttgtatggtgatttggcagAATGCAAGTAGAGGTGAGCAAGCATACAGAGGGGTCCAAAGAAAAGATGACTCGCCCCAATGGGCTGCCAGAATCATTGATTCGTTATGATG
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--tatttctttatgtagtatttttttttaattctttctattatgtattattttgagcttatgggaagtattttctctgtatggaaatgggatatggtggcagAATGCAAGTGGAGGTTAGCAAGCATACAGAGGGGGCTAAGGAGAAGATGCTACGTCCCAATGGATTGCCCGAATCCTTGATTCGATACGATG
upper sequence: Vv06s0004g03700.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G40550.1 (Glycine max), 3'ss of exon 2
ttttattct-tattgaggtttaggtattggatggtgactatctcacagactcacagtagggtgatt--tatatttgatttttgtttgt-atggtgatt-tggcagAATGCAAGTAGAGGTGAGCAAGCATACAGAGGGGTCCAAAGAAAAGATGACTCGCCCCAATGGGCTGCCAGAATCATTGATTCGTTATGATG
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---gattgtatgtggaccttgatgtaatggaagtaaagtagctggcatat--atagcgggattcttacccagcgtgttttttctttgtcatggtgattgtggcagAATGCAAGTGGAGGTTAGCAAGCACACGGAGGGGTCCAAGGAGAAGACGCTACGTCCAAATGGATTGCCCGAATCCTTGATTCGATATGATG
upper sequence: Vv06s0004g03700.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G45780.1 (Arabidopsis thaliana), 3'ss of exon 3
ttttattcttattgaggtttaggtattggatggtgactatctcacagactcacagtagggtgatttatattt----gatttttgtttgtatggtg-atttgg--cagAATGCAAGTAGAGGTGAGCAAGCATACAGAGGGGTCCAAAGAAAAGATGACTCGCCCCAATGGGCTGCCAGAATCATTGATTCGTTATGATG
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------aatcaatcaggaaaaagaaaagaattataga-atctgataaaaaaatatgattttgaggaaaaatcagaagataccaatatgttttgtttatttggaccagAATGCAAGTGGAGGTGAGCAAGCACACTGAAGGGGCCAAAGAAAAGGCTTTGAGGCCCAATGGGCTTCCGGAATCTCTGATTCGATACGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agactcacagtagggtgatttatatttgatttttgtttgtatggtgatttggcagAATGCAAGTAGAGGTGAGCAAGCATACAGAGGGGTCCAAAGAAAAGATGACTCGCCCCAATGGGCTGCCAGAATCATTGATTCGTTATGATG
tgatttatatttgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttattcttattgaggtttaggtattggatggtgactatctcacagactcacagtagggtgatttatatttgatttttgtttgtatggtgatttggcagAATGCAAGTAGAGGTGAGCAAGCATACAGAGGGGTCCAAAGAAAAGATGACTCGCCCCAATGGGCTGCCAGAATCATTGATTCGTTATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - tggatgg
- - - - - - - - - - - - - - - - - - - - - cacagac