1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caaatttgcagcttgaaattaaatatatgttgcaaaatttgttgaaattaaattataaattagcagtaacgtgaagcataatgtttgttggacttggcagTATTTCCTGTATCAATTATTGCGAGGGCTGAAGTATATACACTCTGCCAATGTTTTGCATCGAGATTTGAAACCAAGCAACCTACTACTGAATGCTGACT
species | Vitis vinifera |
transcript | Vv06s0004g03620.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACATCAGATAATACGCTCTTCCCAGGCACTAACAGATGATCATTGTCAG TATTTCCTGTATCAATTATTGCGAGGGCTGAAGTATATACATTCTGCCAATEST: gi|352768505|gb|FQ467461.1|FQ467461
genomic: TACATCAGATAATACGCTCTTCCCAGGCACTAACAGATGATCATTGTCAGgtaagttggt ... gacttggcagTATTTCCTGTATCAATTATTGCGAGGGCTGAAGTATATACACTCTGCCAAT
EST: TACATCAGATAATACGCTCTTCCCAGGCACTAACAGATGATCATTGTCAG TATTTCCTGTATCAATTATTGCGAGGGCTGAAGTATATACACTCTGCCAATEST: gi|32268188|gb|CD717347.1|CD717347
genomic: TACATCAGATAATACGCTCTTCCCAGGCACTAACAGATGATCATTGTCAGgtaagttggt ... gacttggcagTATTTCCTGTATCAATTATTGCGAGGGCTGAAGTATATACACTCTGCCAAT
EST: TACATCAGATAATACGCTCTTCCCAGGCACTAACAGATGATCATTGTCAG TATTTCCTGTATCAATTATTGCGAGGGCTGAAGTATATACACTCTGCCAAT
genomic: TACATCAGATAATACGCTCTTCCCAGGCACTAACAGATGATCATTGTCAGgtaagttggt ... gacttggcagTATTTCCTGTATCAATTATTGCGAGGGCTGAAGTATATACACTCTGCCAAT
aattaaattataaattagcagtaacgtgaagcataatgtttgttggacttggcagTATTTCCTGTATCAATTATTGCGAGGGCTGAAGTATATACACTCTGCCAATGTTTTGCATCGAGATTTGAAACCAAGCAACCTACTACTGAATGCTGACT
cagtaac putative branch site (score: 2)
aattataaattagca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatttgcagcttgaaattaaatatatgttgcaaaatttgttgaaattaaattataaattagcagtaacgtgaagcataatgtttgttggacttggcagTATTTCCTGTATCAATTATTGCGAGGGCTGAAGTATATACACTCTGCCAATGTTTTGCATCGAGATTTGAAACCAAGCAACCTACTACTGAATGCTGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - cagcttg
- - - - - - - -aaattaa
- - - - - - - - - - - - - - - - caaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaagca