1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtttactgttgccaaaactgtagaatatggaattttgtttggaactcaagattgttcctttgttttctatttatgacttattgacatttcacttttgtagCAAAAGTAGTCCTTCAGGAGCACCTCAAAAGATCTCTCCTCGAACTGTACGCCAACTCAAGACAACTTCCTTAGAGTCTGACTCTGCATCCTCTTCGAAT
species | Vitis vinifera |
transcript | Vv06s0004g03400.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATTTTTACTTTGTGACCAGAAAGGAAGTTAAATTATGCAGACTCCAAAAGCAAEST: gi|352782109|gb|FQ470011.1|FQ470011
genomic: AATTTTTACTTTGTGACCAGAAAGGAAGTTAAATTATGCAGACTCC--AA--AAgcaaggtaac ... acttttg
EST: AATTTTTACTTTGTGACCAGAAAGGAAGTTAAATTATGCAGACTCCAAAAGCAA
genomic: AATTTTTACTTTGTGACCAGAAAGGAAGTTAAATTATGCAGACTCC--AA--AAgcaaggtaac ... acttttg
tcaagattgttcctttgttttctatttatgacttattgacatttcacttttgtagCAAAAGTAGTCCTTCAGGAGCACCTCAAAAGATCTCTCCTCGAACTGTACGCCAACTCAAGACAACTTCCTTAGAGTCTGACTCTGCATCCTCTTCGAAT
tattgac putative branch site (score: 2)
tttcactttt CT-rich tract
tttgttttctatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttactgttgccaaaactgtagaatatggaattttgtttggaactcaagattgttcctttgttttctatttatgacttattgacatttcacttttgtagCAAAAGTAGTCCTTCAGGAGCACCTCAAAAGATCTCTCCTCGAACTGTACGCCAACTCAAGACAACTTCCTTAGAGTCTGACTCTGCATCCTCTTCGAAT
- - actgttg
- - - - - -ccaaaac
- - - - - - - - - - - - - - - - - - - - -gaactca