1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agctgaaagatctaatgggatgataatgagatctttttttttttttttctgtacaatatccctcttatgcctaattatggtcaaattatcatgtttgcagGTAATGCAAGCGGCTGCTAAACTTGGTATTTCTATTACAATCAGTCAAGTGGGAAGTGATTTGCCTACTACTGGAACTCCTGCTACTGTGTCTCCAATCG
species | Vitis vinifera |
transcript | Vv06s0004g03150.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTTTTGCTCAATCCTCTAGTTAGCAAAATTGAAACCAGCCATAATCAG GTAATGCAAGCGEST: gi|110708371|gb|EE085836.1|EE085836
genomic: TGGTTTTGCTCAATCCTCTAGTTAGCAAAATTGAAACCAGCCATAATCAGgtcagtcatc ... atgtttgcagGTAATGCAAGCG
EST: TAGCAAAATTGAAACCAGCCATAATCAG GTAATGCAAGCGGCTGCTAAACTTGGTATTTCTATTACAATCAGTCAAGTG
genomic: TAGCAAAATTGAAACCAGCCATAATCAGgtcagtcatc ... atgtttgcagGTAATGCAAGCGGCTGCTAAACTTGGTATTTCTATTACAATCAGTCAAGTG
tttctgtacaatatccctcttatgcctaattatggtcaaattatcatgtttgcagGTAATGCAAGCGGCTGCTAAACTTGGTATTTCTATTACAATCAGTCAAGTGGGAAGTGATTTGCCTACTACTGGAACTCCTGCTACTGTGTCTCCAATCG
gcctaat putative branch site (score: 3)
aaattatcatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctgaaagatctaatgggatgataatgagatctttttttttttttttctgtacaatatccctcttatgcctaattatggtcaaattatcatgtttgcagGTAATGCAAGCGGCTGCTAAACTTGGTATTTCTATTACAATCAGTCAAGTGGGAAGTGATTTGCCTACTACTGGAACTCCTGCTACTGTGTCTCCAATCG
- -tgaaaga
- - - - - -ctaatgg
- - - - - - - - - - - - aatgaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaatta