Sequence
atgc intronic sequence ATGC exonic sequence...atgtcctcgctatattagttagatactgattttcctaattcagttgtccacatatcttgaatctttgtcatctgaaaacataaatttggatgttgttcagGGGAGTTAAGCATAATTGAGAAGTCTCTGAACCCAGGCTTGGATAGTATAGGAGTCAGAGTGCCTGACTGTGACTTTATCAGAGTCATTGCCCATGGTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G20640.1 (Glycine max), 3'ss of exon 3
-atgtcctcgctatattagttagatactgattttcctaa-ttcagttgtccacatatcttgaatctttgtcatctgaaaa-cata-aatttggatgttgttcagGGGAGTTAAGCATAATTGAGAAGTCTCTGAACCCAGGCTTGGATAGTATAGGAGTCAGAGTGCCTGACTGTGACTTTATCAGAGTCATTGCCCATGGTTC
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aatgtagtc-ctatttcttcaacccccttgtcaacatatcttctgtgaacctcagattttg--ttttaaagaactaaagatcctataaattgtctgat-tacagGGGATTCAAGTATTCTTGAACGATCTTTGAACCCAGGATTTGATAGTATAGGAGTTAGAGTGCCTGATTGCAATTTCATCAGGATCATTGCCCGTGGTTC
upper sequence: Vv06s0004g02920.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G07280.1 (Glycine max), 3'ss of exon 4
atgtcctcgctatattagttagatactgattttcctaattcagttgtccacatatcttgaatctttgtcatctgaaaacataaatttggatgttgttcagGGGAGTTAAGCATAATTGAGAAGTCTCTGAACCCAGGCTTGGATAGTATAGGAGTCAGAGTGCCTGACTGTGACTTTATCAGAGTCATTGCCCATGGTTC-----------------------------------
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-------------------------------------------------------------------------------gtatatttggatattttacagg--agtcaagtattcttgaacgatctttgaacccaggatttgatagtataggagttagagtgcctgattgcaatttcatcagGATCATTGCCTGTGGTTCAGGAACTGCCCTAGCCCTTACCAGTGCAAACCTAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtccacatatcttgaatctttgtcatctgaaaacataaatttggatgttgttcagGGGAGTTAAGCATAATTGAGAAGTCTCTGAACCCAGGCTTGGATAGTATAGGAGTCAGAGTGCCTGACTGTGACTTTATCAGAGTCATTGCCCATGGTTC
tgaaaacataaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgtcctcgctatattagttagatactgattttcctaattcagttgtccacatatcttgaatctttgtcatctgaaaacataaatttggatgttgttcagGGGAGTTAAGCATAATTGAGAAGTCTCTGAACCCAGGCTTGGATAGTATAGGAGTCAGAGTGCCTGACTGTGACTTTATCAGAGTCATTGCCCATGGTTC
-tgtcctc
- - - - - - - - - - - - - - - - - - - - - - - -ccacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaca