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...ttgtcatacttcccttaataatcagatcctactaaaaaacctatggcctctggctctcatttctgactcagttccatgattgtttgaaaatttttggcagGGTGATGGTGGTTTATTTTGTGGGCTTCATGTTGATAATGGTCGTATTGGGGGAAAAATGAAGAAGACATTAAGGGAGGTAATTGAGAAGTATAACTTGG
species | Vitis vinifera |
transcript | Vv06s0004g02330.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGAGTTACCAGAGTGGGAATTTAAAAGTTATTTGGGATGGCATGAGCAG GGTGATGGTGGTTTATTTTGTGGGCTTCATGTTGATAATGGTCGTATTGGGEST: gi|161716240|gb|FC066503.1|FC066503
genomic: ATGAGTTACCAGAGTGGGAATTTAAAAGTTATTTGGGATGGCATGAGCAGgtttgtcctc ... tttttggcagGGTGATGGTGGTTTATTTTGTGGGCTTCATGTTGATAATGGTCGTATTGGG
EST: ATGAGTTACCAGAGTGGGAATTTAAAAGTTATTTGGGATGGCATGAGCAG GGTGATGGTGGTTTATTTTGTGGGCTTCATGTTGATAATGGTCGTATTGGGEST: gi|161716894|gb|FC068810.1|FC068810
genomic: ATGAGTTACCAGAGTGGGAATTTAAAAGTTATTTGGGATGGCATGAGCAGgtttgtcctc ... tttttggcagGGTGATGGTGGTTTATTTTGTGGGCTTCATGTTGATAATGGTCGTATTGGG
EST: ATGAGTTACCAGAGTGGGAATTTAAAAGTTATTTGGGATGGCATGAGCAG GGTGATGGTGGTTTATTTTGTGGGCTTCATGTTGATAATGGTCGTATTGGGEST: gi|110381798|gb|EC935409.1|EC935409
genomic: ATGAGTTACCAGAGTGGGAATTTAAAAGTTATTTGGGATGGCATGAGCAGgtttgtcctc ... tttttggcagGGTGATGGTGGTTTATTTTGTGGGCTTCATGTTGATAATGGTCGTATTGGG
EST: TGGGATGGCATGAGCAG GGTGATGGTGGTTTATTTTGTGGGCTTCATGTTGATAATGGTCGTATTGGG
genomic: TGGGATGGCATGAGCAGgtttgtcctc ... tttttggcagGGTGATGGTGGTTTATTTTGTGGGCTTCATGTTGATAATGGTCGTATTGGG
gcctctggctctcatttctgactcagttccatgattgtttgaaaatttttggcagGGTGATGGTGGTTTATTTTGTGGGCTTCATGTTGATAATGGTCGTATTGGGGGAAAAATGAAGAAGACATTAAGGGAGGTAATTGAGAAGTATAACTTGG
ttctgac putative branch site (score: 2)
ttttt putative PPT
attgtttgaaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtcatacttcccttaataatcagatcctactaaaaaacctatggcctctggctctcatttctgactcagttccatgattgtttgaaaatttttggcagGGTGATGGTGGTTTATTTTGTGGGCTTCATGTTGATAATGGTCGTATTGGGGGAAAAATGAAGAAGACATTAAGGGAGGTAATTGAGAAGTATAACTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - cttccct
- - - - - - - - - -aatcaga
- - - - - - - - - - - - - - - - taaaaaa
- - - - - - - - - - - - - - - - - - - - - -tggcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaaaa