Sequence
atgc intronic sequence ATGC exonic sequence...ggtctctactatgattttattttcctaaagtcatccctactattgaaagctttctggtactaaaattctcaactgtctgaaatctcataatgttctgcagGAATCATTGGCCCTCTCTCATGGGTCACAATGCGGATTTTGTACTCCTGGTTTCATTATGTCCATGTATGCGTTATTAAGGTCAAGTCAGACACCACCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G41520.1 (Glycine max), 3'ss of exon 4
-----------------------------------------------------------------------ggtct--ctactatgattttattttcctaaagtcatccctactattgaaagctttc---tggtactaaaattct----------caactgtctgaaat----ctcataatgttctgcagGAATCATTGGCCCTCTCTCATGGGTCACAATGCGGATTTTGTACTCCTGGTTTCATTATGTCCATGTATGCGTTATTAAGGTCAAGTCAGACACCACCCA
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gtgacatactgtcttcttttatcatgcatatgtactagtattacttgctattgttttgagtatcctttacttgtttggttctcatggtgtaatgtgtttatctccaagccttgggatatgagctttcttcttattttaaatttatatttacccatcaatactttgaatttacccttgtaat-ctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCACCTA
upper sequence: Vv06s0004g02030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G03870.1 (Glycine max), 3'ss of exon 3
-------------------------------------------------------------------------------ggtctctactatgattttattttcctaaagtcatccct--actattgaaagctttctggtactaaaattct----------caactgtctgaaat----ctcataatgttctgcagGAATCATTGGCCCTCTCTCATGGGTCACAATGCGGATTTTGTACTCCTGGTTTCATTATGTCCATGTATGCGTTATTAAGGTCAAGTCAGACACCACCCA
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gtgacagatgctcagactatcatcttttatcatgcttgtgtacttgttacatgctattgttttgagaatccattacttgtttgcttcccatggtgtaatgtgtttatctccgggccttggctatgagctttcttcttattttaaatttatatttacccatcaatactgtgaatttacccttgtaat-ctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCGCCTA
upper sequence: Vv06s0004g02030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G34890.1 (Arabidopsis thaliana), 3'ss of exon 3
ggtctctactatgattttattttcctaaagtcatccctactattgaaagctttctggtactaaaattctcaactgtctgaaatctcataatgttctgcagGAATCATTGGCCCTCTCTCATGGGTCACAATGCGGATTTTGTACTCCTGGTTTCATTATGTCCATGTATGCGTTATTAAGGTCAAGTCAGACACCACCCA
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--------gtaagattt-acttctctcaggttctatttcttctta----ttttgcggagattcttttgtca-ctgt-tatgatct--tgattctct-cagGAGTCTTTGGCATCTTCCCATGGTTCCCAATGTGGGTTTTGTACTCCCGGGTTTATCATGTCCATGTATTCGTTGTTGAGGTCAAGTAAAAACTCACCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagctttctggtactaaaattctcaactgtctgaaatctcataatgttctgcagGAATCATTGGCCCTCTCTCATGGGTCACAATGCGGATTTTGTACTCCTGGTTTCATTATGTCCATGTATGCGTTATTAAGGTCAAGTCAGACACCACCCA
tactaaa putative branch site (score: 1)
tactaaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtctctactatgattttattttcctaaagtcatccctactattgaaagctttctggtactaaaattctcaactgtctgaaatctcataatgttctgcagGAATCATTGGCCCTCTCTCATGGGTCACAATGCGGATTTTGTACTCCTGGTTTCATTATGTCCATGTATGCGTTATTAAGGTCAAGTCAGACACCACCCA
- - - - - - - - - - - - - - - tcatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctga