Sequence
atgc intronic sequence ATGC exonic sequence...gttgcagtctatttgggtgagtgcagatttcttgtagcttcgtttatagcaaataaccattaaaaaaaaatagtgtttaatgcaccattattttgttgagCAGGTGGGTATGACAAAGAAGAGAAAGCTGCTAGGGCTTATGATCTTGCCGCCTTGAAGTACTGGGGAACATCCACAACTACCAATTTCCCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01800.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G06010.1 (Glycine max), 3'ss of exon 4
gttgcagtctatttgggtgagt--gcagatttcttgtagcttcgtttatagcaaataaccattaaaaaaaa--atagtgtttaatgcaccattattttgttga--gCAGGTGGGTATGACAAAGAAGAGAAAGCTGCTAGGGCTTATGATCTTGCCGCCTTGAAGTACTGGGGAACATCCACAACTACCAATTTCCCG
|| ||| ||| || | | | ||| | || || | | | ||| || | | | || || |||| ||| | | |||||||| ||||| |||||||||||||| ||||| ||||||||| | || || ||||||||||||| |||||||| |||||||| || ||
gtaagtgtccctttcagtttattttccaaccccttttcatttaattatgctcctggagatgtaaaataagattacaaaacgtattgtttcatttgttttgtaactgcagGTGGATATGATAAAGAAGAGAAAGCAGCTAGAGCTTATGATTTAGCTGCACTGAAGTACTGGGGGACATCCACCACTACCAACTTTCCA
upper sequence: Vv06s0004g01800.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G14040.2 (Glycine max), 3'ss of exon 5
------------gttgcagtctattt--gggtgagtgcagatttcttgtagcttcgtttata-gcaaataaccattaaaaaaaaatagtgtttaatgcaccattattttgttga-gCAGGTGGGTATGACAAAGAAGAGAAAGCTGCTAGGGCTTATGATCTTGCCGCCTTGAAGTACTGGGGAACATCCACAACTACCAATTTCCCG
|| |||| ||||| | ||||| | || || | | | | ||| |||||||| ||| ||||| | | || |||||| ||||||| ||||| |||||||| ||||| |||||| |||||||| | || || ||||||||||||| |||||||| |||||||| || ||
gtaagtgtttctatttcagtttattttccaaccccttttcatttcatatatgtttctggagatgtaaaatcagattaaaaacgtatattgtttcttttaat-ttgttttgtaattacagGTGGATATGATAAAGAAGAAAAAGCAGCTAGGTCTTATGATTTAGCTGCACTGAAGTACTGGGGGACATCCACCACTACCAACTTTCCA
upper sequence: Vv06s0004g01800.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G51190.1 (Arabidopsis thaliana), 3'ss of exon 5
------------gttgcagtctatttgggtgagtgcagatttcttgtagcttcgtttatagcaa-ataaccattaaaaaaaaatagtgtttaatgcaccattattttgttgagCAGGTGGGTATGACAAAGAAGAGAAAGCTGCTAGGGCTTATGATCTTGCCGCCTTGAAGTACTGGGGAACATCCACAACTACCAATTTCCCG
| | | || ||| | || ||| || || || |||| || || || | | || || | |||||||| | | | |||||||||||||||||||||||||||| || || || |||||||| || || | || || ||||| | || || |||||||| || |||
gtgagtataaatgattctttcatttttcttttgtt---attgattataatttgatttaaagtaatgtatatactgaagaatggtt-tgtttaatcggactatgcact------cagGTGGGTATGACAAAGAAGAGAAAGCAGCCAGAGCATATGATCTAGCTGCACTTAAATATTGGGGTCCCTCTACTACTACCAACTTTCCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atagcaaataaccattaaaaaaaaatagtgtttaatgcaccattattttgttgagCAGGTGGGTATGACAAAGAAGAGAAAGCTGCTAGGGCTTATGATCTTGCCGCCTTGAAGTACTGGGGAACATCCACAACTACCAATTTCCCG
ttatttt CT-rich tract
aaataaccattaaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgcagtctatttgggtgagtgcagatttcttgtagcttcgtttatagcaaataaccattaaaaaaaaatagtgtttaatgcaccattattttgttgagCAGGTGGGTATGACAAAGAAGAGAAAGCTGCTAGGGCTTATGATCTTGCCGCCTTGAAGTACTGGGGAACATCCACAACTACCAATTTCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- tgcagtc
- - - - - - ttgggtg
- - - - - - - - - - -tgcagat
- - - - - - - - - - - - - - - - tgtagct
- - - - - - - - - - - - - - - - - - - - - - - - - -aataacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacca