1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgaaaaaatgtatattaattttttctattatttcttcatatttgttttatatgttctcactaataattgtatttatggttgcaattttcttggttaacagTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTATTATTCTGTTGAAACTGTCACG
species | Vitis vinifera |
transcript | Vv06s0004g00830.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCATGGCCAGTTTCATGATCTAGCGGAGCTTTTCCGAATTGGAGGAAAG TGTCCAGATACGAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTATEST: gi|110684715|gb|EE062310.1|EE062310
genomic: TCCATGGCCAGTTTCATGATCTAGCGGAGCTTTTCCGAATTGGAGGAAAGgtatttactc ... tggttaacagTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTAT
EST: TCCATGGCCAGTTTCATGATCTAGCGGAGCTTTTCCGAATTGGAGGAAAG TGTCCAGATACGAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTATEST: gi|161716085|gb|FC065837.1|FC065837
genomic: TCCATGGCCAGTTTCATGATCTAGCGGAGCTTTTCCGAATTGGAGGAAAGgtatttactc ... tggttaacagTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTAT
EST: TCCATGGCCAGTTTCATGATCTAGCGGAGCTTTTCCGAATTGGAGGAAAG TGTCCAGATACGAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTATEST: gi|110377055|gb|EC942116.1|EC942116
genomic: TCCATGGCCAGTTTCATGATCTAGCGGAGCTTTTCCGAATTGGAGGAAAGgtatttactc ... tggttaacagTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTAT
EST: TCCATGGCCAGTTTCATGATCTAGCGGAGCTTTTCCGAATTGGAGGAAAG TGTCCAGATACGAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTATEST: gi|71860995|gb|DT010050.1|DT010050
genomic: TCCATGGCCAGTTTCATGATCTAGCGGAGCTTTTCCGAATTGGAGGAAAGgtatttactc ... tggttaacagTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTAT
EST: TCCATGGCCAGTTTCATGATCTAGCGGAGCTTTTCCGAATTGGAGGAAAG TGTCCAGATACGAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTAT
genomic: TCCATGGCCAGTTTCATGATCTAGCGGAGCTTTTCCGAATTGGAGGAAAGgtatttactc ... tggttaacagTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTAT
tttatatgttctcactaataattgtatttatggttgcaattttcttggttaacagTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTATTATTCTGTTGAAACTGTCACG
cactaat putative branch site (score: 2)
ttttctt putative PPT
actaataattgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaaaaatgtatattaattttttctattatttcttcatatttgttttatatgttctcactaataattgtatttatggttgcaattttcttggttaacagTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTATTATTCTGTTGAAACTGTCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc