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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgcctaccatctgtccttgacgttgagattgtctccagtaaatatctcaacacaaatttgtccgtgaggcacttattgatgttttgttatcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG

Basic information

species Vitis vinifera
transcript Vv06s0004g00240.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os02g01280.1 (Oryza sativa), 3'ss of exon 3
-----------------------------------------------------------------------------atgcct-accatctgtccttgacgttgagattgtctccagtaaa----tatctcaacacaaatttg----tccgtgaggcacttattgatgttttgttatcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
                                                                             ||| || | ||| || | |  ||  |  | ||   |    |  |    ||||  | |  |||||      |   |||   |    |  |  ||| |    ||||   |||||||| ||||||| |||||||| |||||||| || ||||||||  | ||||| || |||||||| || || |||||||| ||||||||||| || ||||
gtatgccacgtatagtaaactgttcgtgttcttatgatgcaatcctatcattgcttaaattcagagttttctgaaaaatgactgaacatttggcataaactgtttgttttcttatgatgcaatcctatcatagcttaaattcagagttttctgaaaaatgagtgaacatttggcatgcacc---agGTTGAGCTGGAGGACCCTGTTGAAAATATTGGAGCCAAATTAGTCCGGCAAGCTGCAGCCAAGACAAATGATTTGGCTGGTGATGGGACAACGACTTCTG

upper sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os06g02380.1 (Oryza sativa), 3'ss of exon 3
-----atgcctaccatctgtccttgacgttg--agattgtctccagtaaatatctcaacacaaatttgtccgtgaggcacttattgatgttttgttatcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
      |    | ||  |   || || |||    |||| |||     |  ||  || |    ||||||  |  ||       | | | | | |  | |   ||  |||||||  |||||||||||||||| |||||||| ||||| || || || |||||||| || |||||||| || || ||||| ||||| ||||| || ||||
ttttcttattgaacaagtcaactggaggtttctggattatctgtgtaacctagttcca---gaatttgagca-gaattttcaagtaacgatct-ctgta--ctgcagGTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAAGCAGCAGCAAAGACCAATGATTTAGCTGGAGATGGCACAACTACTTCTG

upper sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G015989_T01 (Zea mays), 3'ss of exon 3
----------------atgcctaccatctgtccttgacgttgagattgtctccagtaaatatctcaacacaaatttgtccgtgaggcacttattgatgttttg-----ttatcacctat-agGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
                |  | |||||||  |  ||   | |   | ||   |||     |     |||      | |     |||   | |  | ||||| ||     |   ||   |  |||||||  | ||||| |||||||| ||||||||||||||||| ||  | ||||| ||||| || || || ||||||||||| ||||||||||| || || |
gtgcacatctgactacaaacttaccatcgtttgttcttgctcgtactgcaaccataccctgctctaacttcttgtggctgccgagtttcctcat-atgttctgggctgtggccatgcaccagGTTGAACTTGAGGACCCTGTTGAAAATATTGGTGCTAAATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGG

upper sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G083716_T04 (Zea mays), 3'ss of exon 3
atgcctaccatctgtccttgacgttgagattgtctccagtaaatatctcaacacaaatttgtccgtgaggcacttat-tgatgttttgttatcac----ctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
   |   |  |   | ||  | | | | |   | ||  | || ||    | |  |  |  ||   ||  | | |||  | ||  ||  | ||| |    || ||||||||| ||||||| ||||| || || ||||| |||||||| || || ||||| || || |||||||||||  | ||||| ||||||||||| || ||||
---ctctctgttctttctgaaggcttataggttatcatgcaagtagt--agcgtagttaagtatatgttgaatttaggtaataattgctaatccctgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAAGCTGCAGCTAAGACCAACGATCTTGCTGGAGATGGGACAACCACCTCTG

upper sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G18760.2 (Glycine max), 3'ss of exon 2
atgcctaccatctgtccttgacgttgagattgtctccagtaaatatctcaacacaaatttgtccgtgaggcacttattgatgttttgttatcacctat------agGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
     |   || |||    |  | |  ||||   |     || | | |  |     |||  |   |   |    |||||||||||||||        |      ||||||||||||||||||| ||||||||||||||||| || || ||||||||||| ||||||||||| |||||||||||||| ||||| || || || || |
----tttgaatttgtttacgtggataggatttcatttg--aattgtgtttaagtggattgtttgtttgtgtttgtattgatgttttgttgaatttggtttggtaagGTTGAGTTGGAGGATCCCGTTGAGAATATTGGTGCCAAGTTGGTGAGACAAGCGGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACCTCGG

upper sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G40110.1 (Glycine max), 3'ss of exon 2
atgcctaccatctgtccttgacgttgagattgtctccagtaaatatctcaacacaaatttgtccgtgaggcacttattgatgttttgttatcacctat------agGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
 ||  |   || |||   ||  | |  ||||   |     || | | |  |      ||| |  |    |    | |||||| ||||||       ||      ||||||||||||||||||| |||||||||||||| || || || ||||||||||||||||||||||| |||||||||||||| ||||| || || || || |
-tgtttga-atttgtttatgtggataggatttcatttg--aattttgtttaagtgggttttttgg--gtgtttgttttgatgctttgttgaatttgatttgggaagGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAAGCAGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACTTCGG

upper sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G56500.2 (Arabidopsis thaliana), 3'ss of exon 3
atgcctaccatctgtccttgacgttgagattgtctccagtaaatatctcaacacaaatttgtccgtgaggcacttattgatgttttgttatcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
         | | ||  |     |||   |||| || | |   ||          || | |    ||  |   ||    |  ||||| | |    | ||||||||| | |||||||| |||||||| |||||||||||  ||||||||||||| ||| ||||||| || ||||| ||||| ||||| ||||| || ||||
-------gtaacggtgttatctcttg---ttgtgtctaatgtgtaatcaggtgtgaaatcgatt-tgtagattttgaaaagcttttgctgtttgtt-tagGTTGAGCTTGAGGATCCAGTTGAGAACATTGGTGCTAAGCTAGTGAGACAAGCTGCTTCCAAGACTAATGACTTAGCTGGTGATGGAACAACGACTTCTG

upper sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 3'ss of exon 3
atgcctaccatctgtccttgacgttgagattgtctccagtaaatatctcaacacaaatttgtccgtgaggcacttattgatgtttt--gttatcaccta--tagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
                       |  |  || |   | ||  |       |      |||     | |   |||| |  | | ||   ||| ||  ||   ||||| ||||||||||| || |||||||| |||||||| ||  | || || ||||||||||| |||||||| ||||||||||| || || |||||||||||||
--------------------gtatgaaatttattgtctgtttaaccaattatgttcctttcgtttttaattacttctctaagcttaaggttttcttctgcttagGTCGAGTTGGAGGACCCGGTTGAGAACATTGGTGCAAAGCTTGTAAGGCAAGCAGCTGCAAAGACCAATGACTTGGCTGGTGACGGTACAACAACATCTG

upper sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G55490.2 (Arabidopsis thaliana), 3'ss of exon 3
atgcctaccatctgtccttgacgttgagattgtctccagtaaatatctcaacacaaatttgtccgtgaggcacttattgatgttttgttatcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
                  ||   ||   |    |||   |||  || |     |  |||   | | |     ||||  | | |     | || ||| |||||||||||||| || || |||||||| ||||| |||||  | ||||| ||||| |||||||| ||||| ||||||||||| || || |||||||||||||
---------------gtatggaattattacc-cctctgataatgatttttgttctcattcaactgagt----cttagagtt-tcaaactttctcctgtagGTTGAGTTGGAAGACCCGGTTGAGAACATTGGCGCTAAGCTTGTGAGGCAAGCGGCTGCCAAAACCAATGACTTGGCTGGTGACGGTACAACAACATCTG

upper sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S14_298V6.1 (Physcomitrella patens), 3'ss of exon 2
--------------------------------------------------------------------------------------------atgcctaccatctgtccttgacgttgagattgtctccagtaaatatctcaacacaaatttg---tccgtgaggcacttattgatgttttgttatcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
                                                                                              |  ||  ||||     | | |||  | || | ||  | || ||  |   ||  | ||||   |     |   ||    |||   |  |   |||   | |||||||| | |||||||| || ||||| || ||||| || || ||||| ||||| || |||||||| || ||||||||||| || || || || || ||||
gttagggcttgcatcctctctatgagcccggatttattatgttgtttacttggtttttttggataagcgcgattttttttttgaggggggcggggtgtagaatcttgggataaggtttcg-ttctttcttg-aattagatgcgcatgagtttgagcttttcaattaacgcgctgaatctcggaactca---acagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAGCGGCAGCCAAGACGAATGACTTGGCTGGTGACGGTACCACCACCTCTG

upper sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S276_75V6.1 (Physcomitrella patens), 3'ss of exon 2
-----------------------------------------------atgcctaccatctgtccttg--acgttgagattgtctccagtaa-atatctcaacacaaatttgtccgtgag--gcacttattgatgttttgttatcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
                                                  |||   |  | ||||    ||   | |     ||| |||||   |  |    |  |     |  |  ||  | | | | |   |   ||   |||  | ||||| ||| | || || || || ||||||||||| || || || || || |||||  |||||||||||||||| |||||||| ||||| || || || ||||
gttagtggtgtctccccttacgtgagggtcgaggttcatgtgtttctgctccttggaaatctcctgagaaccacgtggcgaactcaagtaatgcacttgcttatgatgggattagctagttgaattgactatggcgctgaactcaa-tgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAAGCTTCTGCCAAGACCAACGATTTGGCTGGTGATGGTACCACCACCTCTG

upper sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S15_485V6.2 (Physcomitrella patens), 3'ss of exon 2
----------------------------------atgcctaccatctgtccttgacg-ttgagattgtc-tccagtaaatatctcaac-acaaatttgtccgtgaggc-------acttattgatgttttgttatcaccta--------------tagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
                                    |  |  |       |||||   ||| |||  |  | ||| |     || |   ||| | |||| ||| | |        |  | || |  |   |||   ||| |               |||| ||| | || || || || ||||||||||| || || || ||||| || ||| |||| ||||||||||| |||||||| ||||| || || || || |
gttggtgataattttccttttgtgaggttgagtttcgattggctcaatctcttgagaattgcgatcatgattcagaagtagactgagtgacatacttgttcgtaacgattataaaatctgttcaattgacgttgaaaccgaacacgggtgatgaccagGTCGAGCTCGAAGACCCAGTGGAGAATATTGGAGCCAAGTTGGTGAGGCAGGCATCTGCGAAGACCAACGATTTGGCTGGAGATGGCACCACTACCTCCG

upper sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ32217 (Selaginella moellendorffii), 3'ss of exon 2
atgcctaccatctgtccttgacgttgagattgtctccagtaaatatctcaacacaaatttgtccgtgaggcacttattgatgttttgttatcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
                                      |||  |  ||   |     ||| |   ||| ||  |  ||      | |  ||    | ||| |||| ||||| || || |||||||| |||||||  ||| | ||||| ||||| ||| | || |||||||| |||||||||||||| || || || ||  
--------------------------------------gtatgtgccttgtc-----tttcttgttgatgctgtggtttgctgatggaaatgtattttagATTGAATTGGAAGACCCGGTTGAGAACATTGGTGTGAAACTCGTGAGGCAAGCTGCTTCTAAAACCAACGATTTGGCTGGGGATGGAACGACGACTTCCT

upper sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ16507 (Selaginella moellendorffii), 3'ss of exon 2
atgcctaccatctgtccttgacgttgagattgtctccagtaaatatctcaacacaaatttgtccgtgaggcacttattgatgttttgttatcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
                                      |||  | |||   |     ||| |   ||| ||  |  ||      | |  ||    | ||| |||| ||||| || || |||||||| |||||||  ||| | ||||| ||||| ||| | || |||||||| ||||||||||||||||| || || ||  
--------------------------------------gtatgtgtcttgtc-----tttcttgttgatgctgtggtttgctgatggaaatgtattttagATTGAATTGGAAGACCCGGTTGAGAACATTGGTGTGAAACTCGTGAGGCAAGCTGCTTCTAAAACCAACGATTTGGCTGGGGATGGGACGACGACTTCCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110685246|gb|EE063449.1|EE063449
EST:     AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAG                         GTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
genomic: AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAGgtatgttaag ... tcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
EST: gi|110725842|gb|EE102769.1|EE102769
EST:     AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAG                         GTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
genomic: AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAGgtatgttaag ... tcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
EST: gi|351022807|gb|FQ428716.1|FQ428716
EST:     AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAG                         GTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
genomic: AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAGgtatgttaag ... tcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
EST: gi|110699104|gb|EE077129.1|EE077129
EST:     AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAG                         GTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
genomic: AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAGgtatgttaag ... tcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
EST: gi|351024818|gb|FQ430643.1|FQ430643
EST:     AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAG                         GTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
genomic: AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAGgtatgttaag ... tcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
EST: gi|349833403|gb|FQ420149.1|FQ420149
EST:     AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAG                         GTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
genomic: AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAGgtatgttaag ... tcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
EST: gi|29782617|gb|CB348122.2|CB348122
EST:     AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAG                         GTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
genomic: AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAGgtatgttaag ... tcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
EST: gi|30256253|gb|CB972096.1|CB972096
EST:     AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAG                         GTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
genomic: AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAGgtatgttaag ... tcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
EST: gi|110689447|gb|EE065678.1|EE065678
EST:     AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAG                         GTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
genomic: AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAGgtatgttaag ... tcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
EST: gi|351040630|gb|FQ438174.1|FQ438174
EST:     AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAG                         GTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
genomic: AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAGgtatgttaag ... tcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
EST: gi|351025708|gb|FQ426722.1|FQ426722
EST:     AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAG                         GTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA
genomic: AGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAGgtatgttaag ... tcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcaacacaaatttgtccgtgaggcacttattgatgttttgttatcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG
                             tattgat  putative branch site (score: 3)
                                     ttttgttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgcctaccatctgtccttgacgttgagattgtctccagtaaatatctcaacacaaatttgtccgtgaggcacttattgatgttttgttatcacctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- -cctacca
- - - - - - -gtccttg
- - - - - - - - - - - - - - - tgtctcc
- - - - - - - - - - - - - - - - - - - - - - - - caacaca